BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC1ZD02RM1.SCF screened BAC_end
         (983 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1724                                                         894   0.0  

>3x_Contig1724 
          Length = 20938

 Score =  894 bits (451), Expect = 0.0
 Identities = 533/554 (96%), Gaps = 5/554 (0%)
 Strand = Plus / Minus

                                                                         
Query: 43    cttcgagatgctttagtacagaagaa-caactcgaagccaagtggaatagtttagagcaa 101
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 11080 cttcgagatgctttagtacagaagaaacaactcgaagccaagtggaatagtttagagcaa 11021

                                                                         
Query: 102   gaggtatacgataaagaaacagagtatctatcacagaaaccatcttccagaatggggaac 161
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11020 gaggtatacgataaagaaacagagtatctatcacagaaaccatcttccagaatggggaac 10961

                                                                         
Query: 162   attctgctcgggtttcagggtttcaacaagagcagttctgcgcagcagatattgtctgac 221
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10960 attctgctcgggtttcagggtttcaacaagagcagttctgcgcagcagatattgtctgac 10901

                                                                         
Query: 222   ctttcacattcgtcaaatgcccagccattggacgataatgatcgcattttttcattaagt 281
             |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10900 cactcacattcgtcaaatgcccagccattggacgataatgatcgcattttttcattaagt 10841

                                                                         
Query: 282   tcgtacctttttgcaaaacaattggctgcttccaatcatcaagaacaaacgaagtccaat 341
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10840 tcgtacctttttgcaaaacaattggctgcttccaatcatcaagaacaaacgaagtccaat 10781

                                                                         
Query: 342   gattgaacaggaagcttatctgtttgccctcttcactgagacatatccaggtccaggaca 401
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10780 gattgaacaggaagcttatctgtttgccctcttcactgagacatatccaggtccaggaca 10721

                                                                         
Query: 402   ccggacacaagagacaagagacaagagacaagagaaactaagggaggggggaagaaaaac 461
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 10720 ccggacacaagagacaagagacaagagacaagagaaactaaggga-gggggaagaaaaac 10662

                                                                         
Query: 462   ggtattattttaccccgcatttatttttcttgaagcacttctttaatgctcgngaaaatt 521
             |||||||||||||||||||| ||||| ||||||||||||  || |||||||| || ||||
Sbjct: 10661 ggtattattttaccccgcatctatttctcttgaagcactctttaaatgctcgtgataatt 10602

                                                                         
Query: 522   aatcactttgt-acaatttggattctcttctcct-aaggattttcaattactaaccctt- 578
             ||||||||||| ||| | || |||||||  |||| ||| ||||||||||||| |||||| 
Sbjct: 10601 aatcactttgtaacattatgtattctctcttcctaaagtattttcaattacttaccctta 10542

                           
Query: 579   atttttgagaggcc 592
             ||||||||||||||
Sbjct: 10541 atttttgagaggcc 10528


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9137
Number of Sequences: 1807
Number of extensions: 9137
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)