BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZD03RM1.SCF screened BAC_end
(1023 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 1310 0.0
>3x_Contig1641
Length = 13261
Score = 1310 bits (661), Expect = 0.0
Identities = 717/733 (97%), Gaps = 2/733 (0%)
Strand = Plus / Plus
Query: 45 acgacgaatccatctatgtctagaaggaactctgtctctcagtttagacgtgagtctatg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12384 acgacgaatccatctatgtctagaaggaactctgtctctcagtttagacgtgagtctatg 12443
Query: 105 caagcaggtttcattgatatgcccataaaacaaagctctcaaccccctccttcatccgta 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12444 caagcaggtttcattgatatgcccataaaacaaagctctcaaccccctccttcatccgta 12503
Query: 165 tgtgccgttggatcattcaatggctttgcaaaaccttggtctggcgatgaggatttgttg 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 12504 tgtgccgttggatcattcaatggctttgcaaaaccttggtctggcgatgaggataagttg 12563
Query: 225 ttggtagaaaaacgtcaaaggtaccacttgtccattgatgagctttcaatcttgttacct 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12564 ttggtagaaaaacgtcaaaggtaccacttgtccattgatgagctttcaatcttgttacct 12623
Query: 285 catagatcagaacaagagatccaatggagaatggattcgttacatataacgcctagcgat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12624 catagatcagaacaagagatccaatggagaatggattcgttacatataacgcctagcgat 12683
Query: 345 gcagttagtactgctagtccttccgccaatgttaatcaatcgagttcttcagatgaggtc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12684 gcagttagtactgctagtccttccgccaatgttaatcaatcgagttcttcagatgaggtc 12743
Query: 405 cactctacttactcaccagatactgccgtagaggagcatgacgacattgacgatgttgat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12744 cactctacttactcaccagatactgccgtagaggagcatgacgacattgacgatgttgat 12803
Query: 465 gttgatgtagagattgttggccgcatggaagactctattgccccaactcagctaagagat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12804 gttgatgtagagattgttggccgcatggaagactctattgccccaactcagctaagagat 12863
Query: 525 gaatctcctacgttttctcaaacatcttcgactggttctttcgctcgtgagagatcgcca 584
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 12864 gaatctcctacgttttctcaaacatcttcgactggttcttccgctcgtgagagatcgcca 12923
Query: 585 gtgttttcaccggacgctcattccttgagagaccattctccaactatttctgatgtgaac 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12924 gtgttttcaccggacgctcattccttgagagaccattctccaactatttctgatgtgaac 12983
Query: 645 aacttatctttttattgcaataggatgcctgccagcgtaccgaagcaaattcttc-aaca 703
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 12984 aactcatctttttatggcaataggatgcctgccagcgtaccgaagcaaattcttcaaaca 13043
Query: 704 caggcttgtaatgaacaaacccctcagtttacttcgaaattattgcaatcttcctaaacc 763
|||||| ||||||||||||| || ||||| ||| |||| | || |||||| |||| ||||
Sbjct: 13044 caggctagtaatgaacaaacgccccagttcactccgaattcatcgcaatc-tcctgaacc 13102
Query: 764 accacataaccat 776
|||||||||||||
Sbjct: 13103 accacataaccat 13115
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7054
Number of Sequences: 1807
Number of extensions: 7054
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 1023
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1007
effective length of database: 10,329,639
effective search space: 10401946473
effective search space used: 10401946473
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)