BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC1ZD04FM1.SCF screened BAC_end
         (1003 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1569                                                        1404   0.0  

>3x_Contig1569 
          Length = 11625

 Score = 1404 bits (708), Expect = 0.0
 Identities = 794/811 (97%), Gaps = 9/811 (1%)
 Strand = Plus / Minus

                                                                        
Query: 86   acatactctgagatccagtggatagtgaattctgttgaaaagtttggcattacaatttcg 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9438 acatactctgagatccagtggatagtgaattctgttgaaaagtttggcattacaatttcg 9379

                                                                        
Query: 146  tgcttctgaatatttgaaccttttcaaatgaatagccaaagtttttggtaaagacttcaa 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9378 tgcttctgaatatttgaaccttttcaaatgaatagccaaagtttttggtaaagacttcaa 9319

                                                                        
Query: 206  tcccacagtacgctcatttttttgtaagccacaacatttatcgcagtaaaatttattggc 265
            ||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||
Sbjct: 9318 tcccacagtacgctcagcttcttgtaagccacaacatttatcgcagtaaaatttattggc 9259

                                                                        
Query: 266  accagttaataactcgcgatgtttgtagttgtttaaaatgtcttgaattttgatttcttc 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9258 accagttaataactcgcgatgtttgtagttgtttaaaatgtcttgaattttgatttcttc 9199

                                                                        
Query: 326  gtcttcctgaatctcaataggaaaatctaaaaatggttcatctcttgcagtgatagtatc 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9198 gtcttcctgaatctcaataggaaaatctaaaaatggttcatctcttgcagtgatagtatc 9139

                                                                        
Query: 386  gcaagtaaaacatttagtactattgcataatgaccctttgaacagatcctcgataaatgt 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9138 gcaagtaaaacatttagtactattgcataatgaccctttgaacagatcctcgataaatgt 9079

                                                                        
Query: 446  cggttttgattcaagtttatcagtatccagttccatatctctttttaaagtatcacttaa 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9078 cggttttgattcaagtttatcagtatccagttccatatctctttttaaagtatcacttaa 9019

                                                                        
Query: 506  ttcgttcaataaataatttaaaaattcatgtgcgtcctgatgcatcgaagaactaaacaa 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9018 ttcgttcaataaataatttaaaaattcatgtgcgtcctgatgcatcgaagaactaaacaa 8959

                                                                        
Query: 566  gatattctcttgtttcaatatattgacaaagttcgaaggagatacaacacctattgctga 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8958 gatattctcttgtttcaatatattgacaaagttcgaaggagatacaacacctattgctga 8899

                                                                        
Query: 626  ttcattttcagcaatacattcgaaaatatcttttagacccgaatacaatgtaggttttgt 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8898 ttcattttcagcaatacattcgaaaatatcttttagacccgaatacaatgtaggttttgt 8839

                                                                        
Query: 686  acctttcggcagataatccgctaagctggtatcgacgtttacaaccggttccgttgacta 745
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 8838 acctttcggcagataatccgctaagctggtatcgacgtttacaaccgg-tccgttgacta 8780

                                                                        
Query: 746  gcgccgcctttttcctttgttcattgga-ggtgcttttaagtgtgaatttg-atgtggta 803
            ||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||
Sbjct: 8779 gcgccgcctttttcctttgttcaatggagggtgcttttaagtgtgaatttgaatgtggta 8720

                                                                        
Query: 804  ccggctgaggc-cggccagtgcattgngagaaga-gaagacg-actggat-gtggcaaag 859
            ||||||||||| |||||||||||||| ||||||| ||||||| ||| ||| |||||||||
Sbjct: 8719 ccggctgaggcacggccagtgcattgggagaagatgaagacgaacttgatggtggcaaag 8660

                                           
Query: 860  -atttgcgctgca-tgcaccttcggattccc 888
             |||||||||||| ||||| | |||||||||
Sbjct: 8659 aatttgcgctgcattgcacttccggattccc 8629


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7759
Number of Sequences: 1807
Number of extensions: 7759
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 1003
length of database: 10,358,551
effective HSP length: 16
effective length of query: 987
effective length of database: 10,329,639
effective search space: 10195353693
effective search space used: 10195353693
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)