BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC1ZD04FM1.SCF screened BAC_end (1003 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1569 1404 0.0 >3x_Contig1569 Length = 11625 Score = 1404 bits (708), Expect = 0.0 Identities = 794/811 (97%), Gaps = 9/811 (1%) Strand = Plus / Minus Query: 86 acatactctgagatccagtggatagtgaattctgttgaaaagtttggcattacaatttcg 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9438 acatactctgagatccagtggatagtgaattctgttgaaaagtttggcattacaatttcg 9379 Query: 146 tgcttctgaatatttgaaccttttcaaatgaatagccaaagtttttggtaaagacttcaa 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9378 tgcttctgaatatttgaaccttttcaaatgaatagccaaagtttttggtaaagacttcaa 9319 Query: 206 tcccacagtacgctcatttttttgtaagccacaacatttatcgcagtaaaatttattggc 265 |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 9318 tcccacagtacgctcagcttcttgtaagccacaacatttatcgcagtaaaatttattggc 9259 Query: 266 accagttaataactcgcgatgtttgtagttgtttaaaatgtcttgaattttgatttcttc 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9258 accagttaataactcgcgatgtttgtagttgtttaaaatgtcttgaattttgatttcttc 9199 Query: 326 gtcttcctgaatctcaataggaaaatctaaaaatggttcatctcttgcagtgatagtatc 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9198 gtcttcctgaatctcaataggaaaatctaaaaatggttcatctcttgcagtgatagtatc 9139 Query: 386 gcaagtaaaacatttagtactattgcataatgaccctttgaacagatcctcgataaatgt 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9138 gcaagtaaaacatttagtactattgcataatgaccctttgaacagatcctcgataaatgt 9079 Query: 446 cggttttgattcaagtttatcagtatccagttccatatctctttttaaagtatcacttaa 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9078 cggttttgattcaagtttatcagtatccagttccatatctctttttaaagtatcacttaa 9019 Query: 506 ttcgttcaataaataatttaaaaattcatgtgcgtcctgatgcatcgaagaactaaacaa 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9018 ttcgttcaataaataatttaaaaattcatgtgcgtcctgatgcatcgaagaactaaacaa 8959 Query: 566 gatattctcttgtttcaatatattgacaaagttcgaaggagatacaacacctattgctga 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8958 gatattctcttgtttcaatatattgacaaagttcgaaggagatacaacacctattgctga 8899 Query: 626 ttcattttcagcaatacattcgaaaatatcttttagacccgaatacaatgtaggttttgt 685 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8898 ttcattttcagcaatacattcgaaaatatcttttagacccgaatacaatgtaggttttgt 8839 Query: 686 acctttcggcagataatccgctaagctggtatcgacgtttacaaccggttccgttgacta 745 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 8838 acctttcggcagataatccgctaagctggtatcgacgtttacaaccgg-tccgttgacta 8780 Query: 746 gcgccgcctttttcctttgttcattgga-ggtgcttttaagtgtgaatttg-atgtggta 803 ||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||| Sbjct: 8779 gcgccgcctttttcctttgttcaatggagggtgcttttaagtgtgaatttgaatgtggta 8720 Query: 804 ccggctgaggc-cggccagtgcattgngagaaga-gaagacg-actggat-gtggcaaag 859 ||||||||||| |||||||||||||| ||||||| ||||||| ||| ||| ||||||||| Sbjct: 8719 ccggctgaggcacggccagtgcattgggagaagatgaagacgaacttgatggtggcaaag 8660 Query: 860 -atttgcgctgca-tgcaccttcggattccc 888 |||||||||||| ||||| | ||||||||| Sbjct: 8659 aatttgcgctgcattgcacttccggattccc 8629 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7759 Number of Sequences: 1807 Number of extensions: 7759 Number of successful extensions: 50 Number of sequences better than 1.0e-20: 1 length of query: 1003 length of database: 10,358,551 effective HSP length: 16 effective length of query: 987 effective length of database: 10,329,639 effective search space: 10195353693 effective search space used: 10195353693 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)