BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZD04RM1.SCF screened BAC_end
(1022 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1599 1756 0.0
>3x_Contig1599
Length = 10178
Score = 1756 bits (886), Expect = 0.0
Identities = 959/977 (98%), Gaps = 7/977 (0%)
Strand = Plus / Minus
Query: 49 ttacccggattcataccggctgacgtaatgtatatcattcacgtgatcgatgattacctc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2814 ttacccggattcataccggctgacgtaatgtatatcattcacgtgatcgatgattacctc 2755
Query: 109 cctgttcttcttcttgtcaccagcacttctcacccaccttcgtcccgctgccagcaaatt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2754 cctgttcttcttcttgtcaccagcacttctcacccaccttcgtcccgctgccagcaaatt 2695
Query: 169 cgagcaacctcgatatgattggtccgattagatcgaaactgacttggcccctaaactcgg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2694 cgagcaacctcgatatgattggtccgattagatcgaaactgacttggcccctaaactcgg 2635
Query: 229 agagtggggaacccaaatcctttctcttatctatacgaccgggtaacgtaatgtcacttt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2634 agagtggggaacccaaatcctttctcttatctatacgaccgggtaacgtaatgtcacttt 2575
Query: 289 gcctgcttacaccatcagcaacgcactgtagcccctcctccccttatcaatcccaagtat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2574 gcctgcttacaccatcagcaacgcactgtagcccctcctccccttatcaatcccaagtat 2515
Query: 349 gcctttttgttttttcttctgcggtgttttctgaaaaaaatacgtttgggtctgaaaact 408
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2514 gcctttttgttttttcttctgcggtgttttctgaaataaatacgtttgggtctgaaaact 2455
Query: 409 acgccattttcaagctcgaaaagagctattcaaagcacgttattcagcagtcatctttat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2454 acgccattttcaagctcgaaaagagctattcaaagcacgttattcagcagtcatctttat 2395
Query: 469 ttgactatcggttcatcccgtgaaagctggattccatctagtgcagtcccaatcccagtc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2394 ttgactatcggttcatcccgtgaaagctggattccatctagtgcagtcccaatcccagtc 2335
Query: 529 tgagtctccgctttgttatcagaatcgattcgccaattctcattgggagaagaggagcac 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2334 tgagtctccgctttgttatcagaatcgattcgccaattctcattgggagaagaggagcac 2275
Query: 589 agcaaatttagaaaccctcaagagatttctcgcttactcttcctttctttacttcatttt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2274 agcaaatttagaaaccctcaagagatttctcgcttactcttcctttctttacttcatttt 2215
Query: 649 tgactagtgttttcgaatgaattttttttttttggtatggtgattttatcggtatcaaat 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2214 tgactagtgttttcgaatgaattttttttttttggtatggtgattttatcggtatcaaat 2155
Query: 709 acttaatatatntcttaatattacantttatcataataaatgaaattaatgtgctactta 768
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2154 acttaatatatttcttaatattacattttatcataataaatgaaattaatgtgctactta 2095
Query: 769 ctgcctgacattttncctatatat-agagaatgtaaatntgagaatatc-aaagtaactg 826
|||||||||||||| ||||||||| ||||||||||||| |||||||||| ||||||||||
Sbjct: 2094 ctgcctgacattttccctatatataagagaatgtaaatttgagaatatcaaaagtaactg 2035
Query: 827 actgtttagtcccgttcattnctagatgtngntcagtttttttttggtaagatctgtgaa 886
|||||||||||||||||||| |||||||| | |||| |||||||||||||||||||||||
Sbjct: 2034 actgtttagtcccgttcatttctagatgttgttcag-ttttttttggtaagatctgtgaa 1976
Query: 887 ccagcaatagaacagcatttacttgncagtact-aaatatcatatccttattttnttgga 945
||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct: 1975 ccagcaatagaacagcatttacttgtcagtactaaaatatcatatccttatttttttgga 1916
Query: 946 ttttag-tgcttgtaatgatttcttctggg-aatttgatccttta-aagaatcgtacgat 1002
|||||| ||||||||||||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct: 1915 ttttagttgcttgtaatgatttcttctgggaaatatgatcctttagaagaatcgtacgat 1856
Query: 1003 ggcggttgttctttaga 1019
|||||||||||||||||
Sbjct: 1855 ggcggttgttctttaga 1839
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,185
Number of Sequences: 1807
Number of extensions: 14185
Number of successful extensions: 116
Number of sequences better than 1.0e-20: 1
length of query: 1022
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1006
effective length of database: 10,329,639
effective search space: 10391616834
effective search space used: 10391616834
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)