BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZD05FM1.SCF screened BAC_end
(1013 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1017 1459 0.0
>3x_Contig1017
Length = 3431
Score = 1459 bits (736), Expect = 0.0
Identities = 783/795 (98%), Gaps = 4/795 (0%)
Strand = Plus / Plus
Query: 85 cgacggcagctgttagtggttttgtcaaataatcgacatctacaatagccgaatcgttgt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cgacggcagctgttagtggttttgtcaaataatcgacatctacaatagccgaatcgttgt 436
Query: 145 ggcactccacggtaatatggatttcgaaatctttaccgtgatactgggttacatcattat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggcactccacggtaatatggatttcgaaatctttaccgtgatactgggttacatcattat 496
Query: 205 acttccatacaatgtgttcataacgattcttcctttgccttgtctttaaacttcaaatca 264
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acttccatacaatgtgttca-aacgattcttcctttgccttgtctttaaacttcaaatca 555
Query: 265 ggcagcttgattctctctttgatgtcctttagcaaatgtttttcgatatgctgatgcaaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggcagcttgattctctctttgatgtcctttagcaaatgtttttcgatatgctgatgcaaa 615
Query: 325 tgcctcacaaacttctttgaatgtgaattggctgaatccttaatcttttcaggatcctca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgcctcacaaacttctttgaatgtgaattggctgaatccttaatcttttcaggatcctca 675
Query: 385 tgcgattcgtgtagtacaaatggaggatagtacttcaaatgacaatgaacgtgatcaaat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgcgattcgtgtagtacaaatggaggatagtacttcaaatgacaatgaacgtgatcaaat 735
Query: 445 tcctcatcttcagtttcgttcttaatgaatgtttcgaaatcgttcaaatcttcaaacacc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tcctcatcttcagtttcgttcttaatgaatgtttcgaaatcgttcaaatcttcaaacacc 795
Query: 505 ttgacgacttctccggacttggtggtgacattagcaaactttggtcctttatccttcttg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ttgacgacttctccggacttggtggtgacattagcaaactttggtcctttatccttcttg 855
Query: 565 gtcatttctgtgaatattcttctctgatgtagagtgtgtctgtgtgttaaaagttaatat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gtcatttctgtgaatattcttctctgatgtagagtgtgtctgtgtgttaaaagttaatat 915
Query: 625 atgtattaactattgcaaattgatgcttgtgtaccgatggtagcactcaagaaaaaggga 684
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 916 atgtattaactattgcaaattgatgcttgtgtaccgatggtagcactcaagaaaaaggaa 975
Query: 685 aaacacattaacttanggtatacggcanagaggattagcanacttggagttaggatttta 744
|||||||| |||||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 976 aaacacataaacttagggtatacggcaaagaggattagcaaacttggagttaggatttta 1035
Query: 745 ccctctatttatatgccacnttttacctttgntgncttatgtgtttttactccaacaccc 804
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct: 1036 ccctctatttatatgccac-ttttacctttgttgtcttatgtgtttttactccaacaccc 1094
Query: 805 ctaaccctaatt-cacatagatccaaccctaattccggagaggt-caaataaacacaacc 862
|||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 1095 ctaaccctaattccacatagatccaaccctaattccgcagaggtacaaataaacacaacc 1154
Query: 863 agctagagatagcac 877
|||||||||||||||
Sbjct: 1155 agctagagatagcac 1169
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7140
Number of Sequences: 1807
Number of extensions: 7140
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 1013
length of database: 10,358,551
effective HSP length: 16
effective length of query: 997
effective length of database: 10,329,639
effective search space: 10298650083
effective search space used: 10298650083
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)