BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZD05RM1.SCF screened BAC_end
(1024 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1666 1314 0.0
>3x_Contig1666
Length = 16162
Score = 1314 bits (663), Expect = 0.0
Identities = 782/815 (95%), Gaps = 7/815 (0%)
Strand = Plus / Plus
Query: 159 tttttgacatcggtaagaatcgcaactgcatcgatatctttgctgagggagtggctttca 218
||||||| || ||||||||| | || || || ||||| |||| ||||||||||| ||| |
Sbjct: 89 tttttgaaataggtaagaatagaaaatgaatagatatatttgatgagggagtggatttaa 148
Query: 219 tctagtaacagcaaacacatcaatgcaagatgtacacctgaaaacaccaaatggtcggac 278
| |||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tatagtaaaagaaaaaacataaatgcaagatgtacacctgaaaacaccaaatggtcggac 208
Query: 279 aaaaacttgaacttctcaaaaggacaatttacaatagcagtcaatcctaagtgtgcatgc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aaaaacttgaacttctcaaaaggacaatttacaatagcagtcaatcctaagtgtgcatgc 268
Query: 339 tccagtataaaaga-cacttgggctggtaatattgatgcaacaactttcttcagtggata 397
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tccagtataaaagagcacttgggctggtaatattgatgcaacaactttcttcagtggata 328
Query: 398 agtcaaatttaagtaatctgctatagctgtcttggtggaatttgttgcagaattaaacaa 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agtcaaatttaagtaatctgctatagctgtcttggtggaatttgttgcagaattaaacaa 388
Query: 458 aggcagattgtctggaggatgtgtggttacatagtgtttatgataccacgaatagtgaac 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aggcagattgtctggaggatgtgtggttacatagtgtttatgataccacgaatagtgaac 448
Query: 518 caaacagatactatagtgataattaaattccacaaattgggtcacaggttgagtgaacaa 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 caaacagatactatagtgataattaaattccacaaattgggtcacaggttgagtgaacaa 508
Query: 578 ataattccattgttctaaccaacctttaagtttagacaacactgtattcaaaggttgttg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ataattccattgttctaaccaacctttaagtttagacaacactgtattcaaaggttgttg 568
Query: 638 gtcagatatgtcaaagaactccaaacttcgaataaacttantaactatccgagtgagttc 697
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 569 gtcagatatgtcaaagaactccaaacttcgaataaacttataaactatccgagtgagttc 628
Query: 698 aatctctgcncaccattctt-cgtcaaaattcgtggaatgcggcagttccaaagtgagtt 756
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aatctctgc-caccattcttccgtcaaaattcgtggaatgcggcagttccaaagtgagtt 687
Query: 757 tacacattntctaacttctatcgtcaattgtacacattctaccgnatgccacacagttgt 816
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 688 tacacatttctaaacttctatcgtcaattgtacacattctaccggatgccacacagttgt 747
Query: 817 ttatatggcaatgacatagatggttccaaaatctcgcagacgataattgnttcgatttct 876
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct: 748 ttatatggcaatgacatagatggttccaaagtctcgcagacgataattg-ttcgaattct 806
Query: 877 tctgtttcttcgaacacgctattgttatatgtgtcgagatcaggctgcattactggatcc 936
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 807 tctgtttcttcgaacacgctattgttaaatgtgtcgagatcaggctgcattactggatcc 866
Query: 937 agt--atttatagttgacgcc-aagtattcactga 968
||| |||||||||||||||| |||||||||||||
Sbjct: 867 agtaaatttatagttgacgccaaagtattcactga 901
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6975
Number of Sequences: 1807
Number of extensions: 6975
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 1024
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1008
effective length of database: 10,329,639
effective search space: 10412276112
effective search space used: 10412276112
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)