BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZD06RM1.SCF screened BAC_end
(1024 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig715 1612 0.0
>3x_Contig715
Length = 2727
Score = 1612 bits (813), Expect = 0.0
Identities = 931/967 (96%), Gaps = 4/967 (0%)
Strand = Plus / Plus
Query: 43 cttgttatggttggctgttcgaaaactcattgtaagggcagcgttatcggtctttgtgat 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1390 cttgttatggttggctgttcgaaaactcattgtaagggcagcgttatcggtctttgtgat 1449
Query: 103 aatttcaactcagcacatgttacttcgagaaacgggaacgcgcattaaaaggtcgggtaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 aatttcaactcagcacatgttacttcgagaaacgggaacgcgcattaaaaggtcgggtaa 1509
Query: 163 ccctcagttatgaggccacagctaggtgagttgaaagcagacagcaccattgaacagaag 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1510 ccctcagttatgaggccacagctaggtgagttgaaagcagacagcaccattgaacagaag 1569
Query: 223 ctaccatctccaagctaacattgacattctatagtcaaaaagaagttgctttatgtatgt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 ctaccatctccaagctaacattgacattctatagtcaaaaagaagttgctttatgtatgt 1629
Query: 283 tcctgtatgtacaaatccgtggcaaccacaactttttatgcggtaaagaattaaagtatt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1630 tcctgtatgtacaaatccgtggcaaccacaactttttatgcggtaaagaattaaagtatt 1689
Query: 343 atgatattagaaattaatgttactatgtgaaataaatgttgttagagaggagcttgctct 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1690 atgatattagaaattaatgttactatgtgaaataaatgttgttagagaggagcttgctct 1749
Query: 403 gtgagtgaacgataactatagatagtccgttttatagatccagtctgctccaattagatc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1750 gtgagtgaacgataactatagatagtccgttttatagatccagtctgctccaattagatc 1809
Query: 463 tgctccttgatcctttgcgagtctgaaccatttagctgctcgtcttaaatcttttttcct 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1810 tgctccttgatcctttgcgagtctgaaccatttagctgctcgtcttaaatcttttttcct 1869
Query: 523 atttggagtcgtctttgaccaaatggtaccgcataaacacatagaatcaacgtgtcccaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1870 atttggagtcgtctttgaccaaatggtaccgcataaacacatagaatcaacgtgtcccaa 1929
Query: 583 cgatgctgcatattccaaacatttcagacccttccattcatgagcagtgacaccgtatcc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1930 cgatgctgcatattccaaacatttcagacccttccattcatgagcagtgacaccgtatcc 1989
Query: 643 cttcatataagctataccacattcgtacagagcggnggcagctgcgtcattctgtagaga 702
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1990 cttcatataagctataccacattcgtacagagcgggggcagctgcgtcattctgtagaga 2049
Query: 703 tggaagcggttcacgtatctcaaatggatctatnattgcatgtaatacgctgggtttgaa 762
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 2050 tggaagcggttcacgtatctcaaatggatctatatttgcatgtaatacgctggttttgaa 2109
Query: 763 acntctgatacccgttgcacctcttatccagntnaaatgattcgtgttaatcgattctcg 822
| ||||||||||||||||||| |||||| | ||||||||||||| |||||||| |
Sbjct: 2110 atccttgatacccgttgcacctctaatccag-ttaaatgattcgtgtaaatcgatttcgg 2168
Query: 823 taccagacccgtatcttaaggcaagaccatacagccaaaaaagctggtctgtnctncaat 882
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||
Sbjct: 2169 taccagacccgtatcttaaggcaagaccatacag-caaaaaagctgttctgtcctccaat 2227
Query: 883 ttacacgcttcttttgagaagggcagttgaccctttcaggtcaccttttgtttttaattc 942
||||||||||| ||||||| | |||||||||||||||||||||||||| || |||||||
Sbjct: 2228 ttacacgcttc-tttgagatgtgcagttgaccctttcaggtcacctttgtttcttaattc 2286
Query: 943 -atggcaatatggattccttgttttgcattgagaaccttgttaaagttatttttccgcac 1001
|||||||||| ||||| |||||||||| ||||| |||||| |||||||| || ||||
Sbjct: 2287 aatggcaatattgattcgttgttttgcaatgagacgtttgttagagttatttctctgcac 2346
Query: 1002 taattca 1008
|| ||||
Sbjct: 2347 tagttca 2353
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5511
Number of Sequences: 1807
Number of extensions: 5511
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 1024
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1008
effective length of database: 10,329,639
effective search space: 10412276112
effective search space used: 10412276112
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)