BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC1ZD08FM1.SCF screened BAC_end
         (1006 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1640                                                        1003   0.0  

>3x_Contig1640 
          Length = 15521

 Score = 1003 bits (506), Expect = 0.0
 Identities = 581/602 (96%), Gaps = 3/602 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   tttgaagccgcaagatgagaagtataatacttccctttacttagagtcagacgcagactg 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7952 tttgaagccgcaagatgagaagtataatacttccctttacttagagtcagacgcagactg 8011

                                                                        
Query: 147  tcaagtgttacttcagattccctttactgcatctgttaaaatatttgcaattatattacg 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8012 tcaagtgttacttcagattccctttactgcatctgttaaaatatttgcaattatattacg 8071

                                                                        
Query: 207  agttaacaagggtggatcatgttatattacaccaagacacattcagttgtataagaacta 266
            ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct: 8072 agttaacaagggtggatcagggtatagtacaccaagacacattcagttgtataagaacta 8131

                                                                        
Query: 267  caataagaatttggactttgataccataaacgatctgaaggcggagtacaccgtcgagtt 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8132 caataagaatttggactttgataccataaacgatctgaaggcggagtacaccgtcgagtt 8191

                                                                        
Query: 327  tccagacaacgtcggtattgaaccagattataataatgaatcattatttgatgatgacac 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8192 tccagacaacgtcggtattgaaccagattataataatgaatcattatttgatgatgacac 8251

                                                                        
Query: 387  atttatcaagtttgacttgccaaggaatatcttccagaattgtgagaacttgactgtctt 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8252 atttatcaagtttgacttgccaaggaatatcttccagaattgtgagaacttgactgtctt 8311

                                                                        
Query: 447  agtgaaggataactggtcgggtgatgaggatgaccttaatagattatatttctgtgagtt 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8312 agtgaaggataactggtcgggtgatgaggatgaccttaatagattatatttctgtgagtt 8371

                                                                        
Query: 507  aagaggtgaagcgacagggaaactaagaaattcaggagttccaattgttgcagtgtatga 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8372 aagaggtgaagcgacagggaaactaagaaattcaggagttccaattgttgcagtgtatga 8431

                                                                        
Query: 567  gggcgcttcgaaccctggtgatgtgaaatttggattcgcaaactattatttac-ccttgt 625
            ||  ||| ||||||||| |||||||||| ||||| ||||||||||||| |||| ||| ||
Sbjct: 8432 ggcggctccgaaccctgctgatgtgaaa-ttggaatcgcaaactattaattacgcctcgt 8490

                                                                        
Query: 626  aaggggcagttttgttc-agaacaaaaaaaagtttgggtttgtaggaccaatcaacctaa 684
            || |||||||| ||||| |||||||| ||||||||| | | ||| ||| |||||||||||
Sbjct: 8491 aaagggcagttctgttcaagaacaaagaaaagtttgtgatagtaagacaaatcaacctaa 8550

              
Query: 685  aa 686
            ||
Sbjct: 8551 aa 8552


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7566
Number of Sequences: 1807
Number of extensions: 7566
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 1006
length of database: 10,358,551
effective HSP length: 16
effective length of query: 990
effective length of database: 10,329,639
effective search space: 10226342610
effective search space used: 10226342610
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)