BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZD09FM1.SCF screened BAC_end
(1001 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1501 1612 0.0
>3x_Contig1501
Length = 10010
Score = 1612 bits (813), Expect = 0.0
Identities = 858/871 (98%), Gaps = 2/871 (0%)
Strand = Plus / Minus
Query: 88 tgctcaatccttggagtacctaaaactaattttagaaaagggagagatcgatagaaatga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6200 tgctcaatccttggagtacctaaaactaattttagaaaagggagagatcgatagaaatga 6141
Query: 148 ggaagtcttcaaaactattataaggagcttagcggaaaagtatgaattgcacttattcag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6140 ggaagtcttcaaaactattataaggagcttagcggaaaagtatgaattgcacttattcag 6081
Query: 208 caacagctccattctcttaactaaaatattcccaatggaccaagttacttcagctgtcca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6080 caacagctccattctcttaactaaaatattcccaatggaccaagttacttcagctgtcca 6021
Query: 268 atttgaaatgtttaagaatatctttcaactagttaaaccctttgtcaaacctctgctact 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6020 atttgaaatgtttaagaatatctttcaactagttaaaccctttgtcaaacctctgctact 5961
Query: 328 attcgggtatttcgacagatttagcaatgatttgatatcaaattatattgctaatatcgt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5960 attcgggtatttcgacagatttagcaatgatttgatatcaaattatattgctaatatcgt 5901
Query: 388 tggatctatgctgatacctacgaatatgtcccagcaagaatataaaagtctcttacagat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5900 tggatctatgctgatacctacgaatatgtcccagcaagaatataaaagtctcttacagat 5841
Query: 448 agtcaataaaatgccagtacctgaagtcattgataatttgtttacttggctgcgtaaaac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5840 agtcaataaaatgccagtacctgaagtcattgataatttgtttacttggctgcgtaaaac 5781
Query: 508 ggacaactggggaagtattgcaggtgaattgaacttatcaacatggaatgatcatttgtt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5780 ggacaactggggaagtattgcaggtgaattgaacttatcaacatggaatgatcatttgtt 5721
Query: 568 tgccaactttatccaaaaatggattcaagaacaaaagaactcttggagtcaagaaactgt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5720 tgccaactttatccaaaaatggattcaagaacaaaagaactcttggagtcaagaaactgt 5661
Query: 628 ccgcatgttgactgaaagtctctggaatagaccagcagcattcaaagagctgacagcact 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5660 ccgcatgttgactgaaagtctctggaatagaccagcagcattcaaagagctgacagcact 5601
Query: 688 gctgatcaatgcagaacanactcaaatcattaaggacacccttgagaanaatccagacat 747
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5600 gctgatcaatgcagaacaaactcaaatcattaaggacacccttgagaaaaatccagacat 5541
Query: 748 tatcgatgatatttcaccattaggagatttgtcattattggatatcttacctgcaacact 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5540 tatcgatgatatttcaccattaggagatttgtcattattggatatcttacctgcaacact 5481
Query: 808 ggtaaaattctcattttccaaaatacagcagtacgatgattgtattaaaaccaagctttt 867
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5480 ggtaaaatcctcattttccaaaatacagcagtacgatgatgttattaaaaccaagctttt 5421
Query: 868 cttgtgcatatcaacactcgatgagattagccttatttagttcgaattcagaaatactat 927
||||||||||||||||||||||||||||||| | ||| || |||||| ||||| ||||||
Sbjct: 5420 cttgtgcatatcaacactcgatgagattagcataattaag-tcgaatacagaattactat 5362
Query: 928 accaattatttggtacctactgatgatgatg 958
|||||||| ||| ||||||||||||||||||
Sbjct: 5361 accaatta-ttgttacctactgatgatgatg 5332
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7919
Number of Sequences: 1807
Number of extensions: 7919
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 1001
length of database: 10,358,551
effective HSP length: 16
effective length of query: 985
effective length of database: 10,329,639
effective search space: 10174694415
effective search space used: 10174694415
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)