BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZD09RM1.SCF screened BAC_end
(984 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1268 1300 0.0
>3x_Contig1268
Length = 6710
Score = 1300 bits (656), Expect = 0.0
Identities = 737/760 (96%), Gaps = 3/760 (0%)
Strand = Plus / Minus
Query: 46 tggatccgtgtaacctttctgataccctgagaattgatgttttagttctggcaagttatg 105
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5580 tggatccgtgtaacctctctgataccctgagaattgatgttttagttctggcaagttatg 5521
Query: 106 agataatagtggtttcaaatccgtattgaaatcctttggaacggtatatgtacgcaccc- 164
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5520 agataatagtggtttcaaatccgtattgaaatcctttggaacggtatatgtacgcacccc 5461
Query: 165 tgttccagttaattttataaccaccatattgtgtatgtctaccaatacctgaagatctgg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5460 tgttccagttaattttataaccaccatattgtgtatgtctaccaatacctgaagatctgg 5401
Query: 225 tacccttgtacatagacttgttaccatccttcgtcgtcaatggtacacgcttgttaccta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5400 tacccttgtacatagacttgttaccatccttcgtcgtcaatggtacacgcttgttaccta 5341
Query: 285 ctttagaagcaccatagaataacgtaccatcacggtatttcttccaaggtctcgttagtt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5340 ctttagaagcaccatagaataacgtaccatcacggtatttcttccaaggtctcgttagtt 5281
Query: 345 gtgttatttgagattgttgaaaaaatctaacggaggtaggtttcattgctagtttattag 404
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 5280 gtgttatttgagattgttgaaaaaatctagcggaggtaggtttcattgctagtttattag 5221
Query: 405 tctgataatttcaaagttttgacttataaatgagtttgtagatgatgtcaaggtgccttt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5220 tctgataatttcaaagttttgacttataaatgagtttgtagatgatgtcaaggtgccttt 5161
Query: 465 cctgtgtgtcgtgtccttcattgaactttgaactcaaacaattttgacgctgtctgatat 524
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 5160 cctgtgtgtcgtgtccttcattgaactttgaactcaaacaattttgacgctttctgattt 5101
Query: 525 catgttaacagagagaactgaaagctaataaaaaattgtaccatacaaaacaagaaccgg 584
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 5100 catgttaacagagagaactgaaagctaagaaaaaattttaccatacaaaacaagaaccgg 5041
Query: 585 gtaagtttactgattagtgcggacttgcaagagccaggcataagaagagatttattaata 644
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5040 gtaagtttagtgattagtgcggacttgcaagagccaggcataagaagagaattattaata 4981
Query: 645 tgcttgatatatattatagatgcacgtggtcctaaatattctttgttgaagtctatacat 704
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 4980 tgcttgatatatattatagatgcaggtggtcctaaatattcattgttgaagtctatacat 4921
Query: 705 aaaaatgattctatggttttcatagctaatgcggcgaacatcgcatttccgttcctgtct 764
||||||||||||||||||||||||||||||||||||||| |||||||| |||| | |
Sbjct: 4920 aaaaatgattctatggttttcatagctaatgcggcgaactccgcatttcggttctgtttt 4861
Query: 765 ttc-atagtga-ttaaacttcacaatctgactttgacctg 802
||| ||||||| |||| || ||||||||||||||| ||||
Sbjct: 4860 ttcaatagtgatttaacctccacaatctgactttgccctg 4821
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7447
Number of Sequences: 1807
Number of extensions: 7447
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)