BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZD10FM1.SCF screened BAC_end
(994 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig428 1215 0.0
>3x_Contig428
Length = 1780
Score = 1215 bits (613), Expect = 0.0
Identities = 742/776 (95%), Gaps = 7/776 (0%)
Strand = Plus / Plus
Query: 86 cttctttggctctaccatcaaatggcaccaaacagcaaatggtagcgcgatacaagcatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cttctttggctctaccatcaaatggcaccaaacagcaaatggtagcgcgatacaagcatt 718
Query: 146 acgaaatgttatggaatagtaattttttagattcaattgatcctgttgacgaaaatgaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 acgaaatgttatggaatagtaattttttagattcaattgatcctgttgacgaaaatgaac 778
Query: 206 ttaaacgtcgtctatctattttggaagctaagcacaatacagaccattcttctgatagca 265
|||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ttaaacgtcgtctatccagttgggaagctaagcacaatacagaccattcttctgatagca 838
Query: 266 atagcataactaaccttctcaggggtaataaacgtactaatgctataagtgccatgatca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 atagcataactaaccttctcaggggtaataaacgtactaatgctataagtgccatgatca 898
Query: 326 aactttttaaaagcgatagatttgatagaaaaggttggatgagacatcacacgtcaacgt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 aactttttaaaagcgatagatttgatagaaaaggttggatgagacatcacacgtcaacgt 958
Query: 386 ttaaagcattaaaattggaagcacaacgttccgataaacttgcaaagatgaagaaggaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 ttaaagcattaaaattggaagcacaacgttccgataaacttgcaaagatgaagaaggaag 1018
Query: 446 agctctcccagaagagtgatgcgaactcagaagtaagttcggaacctatactaaagattg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 agctctcccagaagagtgatgcgaactcagaagtaagttcggaacctatactaaagattg 1078
Query: 506 atcaaacgtcagagaataattaatagaatctaatattctcaacttttcattatttatcgt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 atcaaacgtcagagaataattaatagaatctaatattctcaacttttcattatttatcgt 1138
Query: 566 atatcagtatatagtatctataattcatc-tgaatgatgtcaggagattcattagggata 624
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 1139 atatcagtatatagtatctataattcatcttgaatgatgtcaggagattcattaaggata 1198
Query: 625 tncttctcttccctctaaa-tgcgacctncagattgcgatggggctggatgtactcttgg 683
| ||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||
Sbjct: 1199 t-cttctcttccctctaaattgcgacctccagattgcgatggggctgattgtactcttgt 1257
Query: 684 ttcctcgacattgctatcactttttggcccccattatattttcttcga-ttcagcgttgg 742
|||||||||||||||||||| ||| ||| ||||| ||||||||||||| |||||||||||
Sbjct: 1258 ttcctcgacattgctatcac-tttgggcacccataatattttcttcgatttcagcgttgg 1316
Query: 743 taggggttaatttattgttccatatgttccgaa-agattaccagtgactcaaaagctttt 801
||||| |||||| | ||| | ||||| |||||| ||||||| ||||||||||||||| |
Sbjct: 1317 tagggtttaattcagtgtccaatatg-tccgaagagattacaggtgactcaaaagcttct 1375
Query: 802 attgattcaatattatcgacaggcttaaactggtttaaatttgcaattgcaattga 857
||||||||||||||| |||||| ||||| || |||||| | |||| |||||||||
Sbjct: 1376 attgattcaatattaccgacagccttaagctcgtttaagtctgcagctgcaattga 1431
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7920
Number of Sequences: 1807
Number of extensions: 7920
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 994
length of database: 10,358,551
effective HSP length: 16
effective length of query: 978
effective length of database: 10,329,639
effective search space: 10102386942
effective search space used: 10102386942
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)