BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZD10RM1.SCF screened BAC_end
(991 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1155 1110 0.0
>3x_Contig1155
Length = 6106
Score = 1110 bits (560), Expect = 0.0
Identities = 676/704 (96%), Gaps = 8/704 (1%)
Strand = Plus / Plus
Query: 45 ccaaaactaacttatgatgcaaaccgaattccttgccttggaaggtatgcaaacatttta 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ccaaaactaacttatgatgcaaaccgaattccttgccttggaaggtatgcaaacatttta 808
Query: 105 ggaatttatcataattgacaaatccgacgacagcttcatagtttgtcgccttaaccatgt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ggaatttatcataattgacaaatccgacgacagcttcatagtttgtcgccttaaccatgt 868
Query: 165 atttctcaattgagccgttggttttttcagcttcttgtgtctcttcaccattttcctgct 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 atttctcaattgagccgttggttttttcagcttcttgtgtctcttcaccattttcctgct 928
Query: 225 gctctattttctctgcctcctgcgtttcttgaacgtcctcaaccttttctgtatcccttt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gctctattttctctgcctcctgcgtttcttgaacgtcctcaaccttttctgtatcccttt 988
Query: 285 cttttgtctctggtgtctttgattctccctttgtactctgctcagaaagctcaggtttaa 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 cttttgtctctggtgtctttgattctccctttgtactctgctcagaaagctcaggtttaa 1048
Query: 345 cctcttcttttccatcttctttcgtctcttgtgaaaggcccacacttaaaggagctgagt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 cctcttcttttccatcttctttcgtctcttgtgaaaggcccacacttaaaggagctgagt 1108
Query: 405 tttcatcgtcatctttactgggaatttctttaattggttccttggtatcgtctcttgtcg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 tttcatcgtcatctttactgggaatttctttaattggttccttggtatcgtctcttgtcg 1168
Query: 465 tttccgtgacttctttagttttgtccgaaaccttctgac-ttttcgatatagtggcctgt 523
||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| | ||||
Sbjct: 1169 tttccgtgactcctttagttttgtccg-aaccttctgactttttcgatatagt-gtctgt 1226
Query: 524 tttattctctgaaggcgcttgcgaaacgataacttctttgttctctccctgaacaagttg 583
|||| ||||||||||||||||||||||||||||||| | |||||| ||||||||||||||
Sbjct: 1227 tttaatctctgaaggcgcttgcgaaacgataacttcctcgttctcgccctgaacaagttg 1286
Query: 584 aatttcgacattttactctcctgactcgtaaaccccaacgtaaaatttcgaaagaagacg 643
||||||||||| | |||||||||||||||| |||||||||||||| ||||||||| ||||
Sbjct: 1287 aatttcgacatctaactctcctgactcgtagaccccaacgtaaaa-ttcgaaagatgacg 1345
Query: 644 tatttctc-aataatttaagggcattttattttattgaaaccttttaacattgtccattt 702
|| ||||| ||||| || |||||| ||| |||| |||| |||||||||||||||||||
Sbjct: 1346 ta-ttctcgaataa-ttcagggcaatttgatttaatgaagtcttttaacattgtccattt 1403
Query: 703 tagcttcccatacctttcttggttcccttgtttttccaatgagg 746
||||||||||||| |||| ||||||| |||||||| ||||||||
Sbjct: 1404 tagcttcccatacgtttc-tggttccgttgtttttacaatgagg 1446
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8661
Number of Sequences: 1807
Number of extensions: 8661
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 991
length of database: 10,358,551
effective HSP length: 16
effective length of query: 975
effective length of database: 10,329,639
effective search space: 10071398025
effective search space used: 10071398025
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)