BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC1ZD11FM1.SCF screened BAC_end
         (985 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig304                                                         1289   0.0  

>3x_Contig304 
          Length = 1230

 Score = 1289 bits (650), Expect = 0.0
 Identities = 665/669 (99%), Gaps = 1/669 (0%)
 Strand = Plus / Plus

                                                                       
Query: 88  tcacttctgtgtcgaagaggcatatgaccttaggaatggaaggtttgttgacgatgctaa 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  tcacttctgtgtcgaagaggcatatgaccttaggaatggaaggtttgttgacgatgctaa 138

                                                                       
Query: 148 ggacaatttcatatttgatgattctcagatattacccttagatgaggtcgtagaacttgt 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ggacaatttcatatttgatgattctcagatattacccttagatgaggtcgtagaacttgt 198

                                                                       
Query: 208 ccaaaacctcattgataaatacttgattccacacaacagagcggaacactcttggaaaag 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ccaaaacctcattgataaatacttgattccacacaacagagcggaacactcttggaaaag 258

                                                                       
Query: 268 agcattggttgggcatggtatatcaggggatattagctggctagaatcgttggacataag 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agcattggttgggcatggtatatcaggggatattagctggctagaatcgttggacataag 318

                                                                       
Query: 328 attaccgaataatgttcaaaccttggatacccaaaaattattcgagaatatgtacggaag 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 attaccgaataatgttcaaaccttggatacccaaaaattattcgagaatatgtacggaag 378

                                                                       
Query: 388 acaatcatcactcaagaggctactgaatttatgcagaataccacactcctaccttcataa 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acaatcatcactcaagaggctactgaatttatgcagaataccacactcctaccttcataa 438

                                                                       
Query: 448 cgcggggaatgattcctactacactctacagttacttttgtcaatgtgcgatataggaac 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cgcggggaatgattcctactacactctacagttacttttgtcaatgtgcgatataggaac 498

                                                                       
Query: 508 aagaatcaagttggatttggacaattggcatcatgtaagaagattagaggagaatttata 567
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aagaatcaagttggatttggacaattggcatcatgtaagaagattagaggagaatttata 558

                                                                       
Query: 568 ttgtgtggagcagctcgaaaaacaagggaagcgtnaaagaaatcgtggaaacaatttctc 627
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 559 ttgtgtggagcagctcgaaaaacaagggaagcgtaaaagaaatcgtggaaacaatttctc 618

                                                                       
Query: 628 acaacgctaagaaatgcattttttctacaatattcgcgctgatattacagtatatagatg 687
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acaacgctaagaaatgcattttttctacaatattcgcgctgatattacagtatatagatg 678

                                                                       
Query: 688 tgcatacgttatgctcatatatatattatattttgctgcccgtaatc-cagttcaccttt 746
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 679 tgcatacgttatgctcatatatatattatattttgctgcccgtaatcacagttcaacctt 738

                    
Query: 747 tcttgtctc 755
           |||||||||
Sbjct: 739 tcttgtctc 747


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7061
Number of Sequences: 1807
Number of extensions: 7061
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)