BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZD11RM1.SCF screened BAC_end
(1003 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1679 1429 0.0
>3x_Contig1679
Length = 11609
Score = 1429 bits (721), Expect = 0.0
Identities = 859/891 (96%), Gaps = 11/891 (1%)
Strand = Plus / Minus
Query: 44 cttttcagaaaagaccttcttcatcgttgtttttgccagtgccttccctcttttgttctc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8457 cttttcagaaaagaccttcttcatcgttgtttttgccagtgccttccctcttttgttctc 8398
Query: 104 agtaatcaaaaagcacccagagaagaagatacaaagttccaatgggctaattcaaaaaaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8397 agtaatcaaaaagcacccagagaagaagatacaaagttccaatgggctaattcaaaaaaa 8338
Query: 164 aagccagcaaaccgcagtattccagtaccatacaactgaaataaacgctgtattaaatat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8337 aagccagcaaaccgcagtattccagtaccatacaactgaaataaacgctgtattaaatat 8278
Query: 224 ccaaattctgagtagcaccgatgcttcaaagatactttgtatctgtcttgtctgctgttg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8277 ccaaattctgagtagcaccgatgcttcaaagatactttgtatctgtcttgtctgctgttg 8218
Query: 284 ttgttgtttttttcctttcagacacttattcctcgctgaactgtttataattcgttcttt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8217 ttgttgtttttttcctttcagacacttattcctcgctgaactgtttataattcgttcttt 8158
Query: 344 tctgggtttggcctctgatatttattttttttggattctgcgcctttgaacttagaaagt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8157 tctgggtttggcctctgatatttattttttttggattctgcgcctttgaacttagaaagt 8098
Query: 404 aatttcaaatacgatgctaatgcttgccagatcaatgattaaaagaaacccccaattgaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8097 aatttcaaatacgatgctaatgcttgccagatcaatgattaaaagaaacccccaattgaa 8038
Query: 464 gcgcaaagttgaaataagtttgatctgccaaaactacgagtgaagtttgtaaaccagaca 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8037 gcgcaaagttgaaataagtttgatctgccaaaactacgagtgaagtttgtaaaccagaca 7978
Query: 524 aggatatatcctatgtaaatttttcgttttttttttggtttggtttctatatctgtttgg 583
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7977 aggatatatcctatgtaaatttttcgttttttttttggtttggtttctatatctgtttgt 7918
Query: 584 gtctggtgtcagttacgcattgtattttttttctatagtatttattgcattatantatgc 643
||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 7917 gtctgttgtcagttacgcattgtatttttttcctatagtatttattgcattatatattgc 7858
Query: 644 gggtagaaacttgttctttattcggatactgaaatcttggcaagacgtgaaatgtttgtt 703
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7857 gggtagaaacttgttctttattcggatactgaaatcttggcaagacgtgaatgttttgtt 7798
Query: 704 tgttg-tagcttctcgagcgagaga-ggctgtgttgagatcatgtctgataaagtgtagc 761
||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 7797 tgttgttagctcctcgagcgagagagggctgtgttgagatcatgtctgataaagtgtagc 7738
Query: 762 ttcgagat-ctatggtgtaaccctgagcttncttttgttgacattggttgccattttgaa 820
| |||||| ||| ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 7737 tccgagatactagggtgtaaccctgagcttccttttgttgacattgtttgccattttgaa 7678
Query: 821 caatt-tagcgaggatat-ctatat-ctaccttctgggcta-tttgaca-cacaaaaaag 875
||||| |||||||||||| |||||| |||| | ||| |||| ||||||| ||||||||||
Sbjct: 7677 caattatagcgaggatatactatatactacttcctgcgctactttgacaccacaaaaaag 7618
Query: 876 c-tgtggaaacgac-cgc-tttttttttctttctattgaaaatgggcccca 923
| ||||||| ||| ||| |||||||||||||||||||| ||| |||||||
Sbjct: 7617 catgtggaactgacgcgcttttttttttctttctattgataattggcccca 7567
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,978
Number of Sequences: 1807
Number of extensions: 11978
Number of successful extensions: 195
Number of sequences better than 1.0e-20: 1
length of query: 1003
length of database: 10,358,551
effective HSP length: 16
effective length of query: 987
effective length of database: 10,329,639
effective search space: 10195353693
effective search space used: 10195353693
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)