BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZD12FM1.SCF screened BAC_end
(1031 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1151 1166 0.0
>3x_Contig1151
Length = 5859
Score = 1166 bits (588), Expect = 0.0
Identities = 742/777 (95%), Gaps = 14/777 (1%)
Strand = Plus / Plus
Query: 88 cagcaattttctttcaaaatgtcatctcaattatcgctctaatcgctacttcaatgtact 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3454 cagcaattttctttcaaaatgtcatctcaattatcgctctaatcgctacttcaatgtact 3513
Query: 148 attcgtggtctttaacattgataattttatgcagtttaccactactggcaactctagccg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3514 attcgtggtctttaacattgataattttatgcagtttaccactactggcaactctagccg 3573
Query: 208 ttttcctctctatgatt-tgtagaaattctcaaaacttgagaacttggaatcttcaaagg 266
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 3574 ttttcctctctatgaaagtggagaaattctcaaaacttgagaacttggaatcttcaaagg 3633
Query: 267 cctcgtcagttttggcatggtctcttgatgcatttcaaatgatacggctattcaacacgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3634 cctcgtcagttttggcatggtctcttgatgcatttcaaatgatacggctattcaacacgt 3693
Query: 327 cttactgggagcagaagaagttcgagacgctagtatccaaatgtaacaaacactttgtca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3694 cttactgggagcagaagaagttcgagacgctagtatccaaatgtaacaaacactttgtca 3753
Query: 387 aatcttgcttatactcagctttgaatgcatcgagtttaaggtttctaacactatgcatgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3754 aatcttgcttatactcagctttgaatgcatcgagtttaaggtttctaacactatgcatgt 3813
Query: 447 ttgtgcaaggtttttggtttggtaatacacaaatcaaacgtgggaagatgaaagctgggg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3814 ttgtgcaaggtttttggtttggtaatacacaaatcaaacgtgggaagatgaaagctgggg 3873
Query: 507 atgtaattacatgtttttcctcttgtttattgttggggtcttccttatcaagtacgttgc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3874 atgtaattacatgtttttcctcttgtttattgttggggtcttccttatcaagtacgttgc 3933
Query: 567 agcagatcgttacaattc-aaagggtaaggcagcaatacaacgtatcaaccagtttcttg 625
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3934 agcagatcgttacaattcaaaagggtaaggcagcaatacaacgtatcaaccagttccttg 3993
Query: 626 ttccccaattct-agtccgccgttggtgaatgggaaaaacgaagttctttcatatcaaca 684
|| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3994 tt-cccaattctaagtccgccgttggtgaatgggaaaaacgaagttctctcatatcaaca 4052
Query: 685 tcttntttaaataggg-tagcaccccatcttttgtgacggtgattattgaattttaggga 743
|||| || ||||||| ||||| |||||||||||||||||||| ||||||| ||||||||
Sbjct: 4053 tcttc-ttcaatagggttagca-cccatcttttgtgacggtga-tattgaa-tttaggga 4108
Query: 744 cgtatcattttgcgtatcccttacttgaccggataattattgtcctaaaaaatggttcca 803
||||||| ||||||||||| |||| |||| ||| |||| ||| |||||||||| |||||
Sbjct: 4109 cgtatca-tttgcgtatcc--tactagaccagatgatta-tgtactaaaaaatgtttcca 4164
Query: 804 taaagaataaaactgggacctacttgcttaattgntgggaaatcaaggtcaaggaaa 860
|||||| |||| || ||| |||| ||||| |||| |||||| ||| ||||| |||||
Sbjct: 4165 taaagattaaatct-ggagctacatgcttcattgttgggaagtcagggtcagggaaa 4220
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7508
Number of Sequences: 1807
Number of extensions: 7508
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 1031
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1015
effective length of database: 10,329,639
effective search space: 10484583585
effective search space used: 10484583585
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)