BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZD12RM1.SCF screened BAC_end
(1019 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1800 1310 0.0
>3x_Contig1800
Length = 38778
Score = 1310 bits (661), Expect = 0.0
Identities = 787/817 (96%), Gaps = 9/817 (1%)
Strand = Plus / Plus
Query: 43 ctttatgcaacttaccatctgcagttcta-catcttcgaatt-aataccgtgatttgccc 100
||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||
Sbjct: 6603 ctttatgcaacttaccatctgcagtactaacatcttcgaattcaataccgtgatttgccc 6662
Query: 101 attcccagataaagccaccttggtaaaacttctccttgtagaacaactcttgatattctt 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6663 attcccagataaagccaccttggtaaaacttctccttgtagaacaactcttgatattctt 6722
Query: 161 tcaaagagccaggaccgttacccattgcatggccgtactcacacaagatcaaaggctttt 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6723 tcaaagagccaggaccgttacccattgcatggccgtactcacacaagatcaaaggctttt 6782
Query: 221 cttacttaccattttcatcagtgtggttcttcctccacctttccataatttcaaatgttg 280
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6783 caaacttaccattttcatcagtgtggttcttcctccacctttccataatttcaaatgttg 6842
Query: 281 ggtacatgaaactaaagatatctgcactcaaagcgttcaagtcaccctcataatgcacaa 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6843 ggtacatgaaactaaagatatctgcactcaaagcgttcaagtcaccctcataatgcacaa 6902
Query: 341 gtctggtaggatccaattgtttaattaacttgtacatggctttgtggtttctgccataac 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6903 gtctggtaggatccaattgtttaattaacttgtacatggctttgtggtttctgccataac 6962
Query: 401 aagcttcgttacccaaggaccagataataatcgaaggatgattgacatctcttaggacaa 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6963 aagcttcgttacccaaggaccagataataatcgaaggatgattgacatctcttaggacaa 7022
Query: 461 gttgggaagctctttctaagtacgcgacctcgtactctggattatctgataagtaatggg 520
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7023 gttgggaagctctgtctaagtacgcgacctcgtactctggattatctgataagtaatggg 7082
Query: 521 cattaacatcgtagagtttatttttagtatctggatattcagcctccaagttcgtatgac 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7083 cattaacatcgtagagtttatttttagtatctggatattcagcctccaagttcgtatgac 7142
Query: 581 gattaaatggctcttgaacaccatgagttttcaagatctgcctcgtcaatgaccccagat 640
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 7143 gattaaatggctcttgaacaccatgag-tttcaagatctgcctcgtcaatga-cccagaa 7200
Query: 641 g-ccagcttatcgaagaggtcatacaccttatgatggtttggattatgcgagttacgaac 699
| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 7201 gcccagcttatcgaagaggtcatacaccttaggatggtttggataatgcgagttacgaac 7260
Query: 700 agcattgatgttaaactttcttattagaatcaggtcccttacaccaaaattctaatggca 759
|||||||||||||||||| | |||||||||| |||||| ||| ||||| ||||||||||
Sbjct: 7261 agcattgatgttaaacttcttcattagaatcaagtccctaacaacaaaa-tctaatggca 7319
Query: 760 ccaactctaccggaccttggaatggtgatcatttctgttgacacctttaaagagaatgtc 819
|| |||||||| ||||||| ||||||||||| ||||||||||||| |||||||||||||
Sbjct: 7320 -cagctctaccgaaccttgg-atggtgatcatgtctgttgacacctctaaagagaatgtc 7377
Query: 820 tttgcc-tttacagttatgttaccggcctttaactcc 855
|||||| || ||||| ||||||||| |||| ||||||
Sbjct: 7378 tttgccattaacagtaatgttaccgtccttcaactcc 7414
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7488
Number of Sequences: 1807
Number of extensions: 7488
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 1019
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1003
effective length of database: 10,329,639
effective search space: 10360627917
effective search space used: 10360627917
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)