BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZE02FM1.SCF screened BAC_end
(1030 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 1205 0.0
>3x_Contig1303
Length = 8112
Score = 1205 bits (608), Expect = 0.0
Identities = 750/791 (94%), Gaps = 5/791 (0%)
Strand = Plus / Minus
Query: 85 ttagccatcaacaaagagtagtgatatagggctgttctttgtttgagctattgaattttc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 ttagccatcaacaaagagtagtgatatagggctgttctttgtttgagctattgaattttc 1706
Query: 145 ctatagtgagtgagtgtttcttgttgaaaagattaggtgcaagaaatacttccaaacaca 204
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1705 ctatagtgagtgagtgtttcttgttgaaaagaaaaggtgcaagaaatacttccaaacaca 1646
Query: 205 ggttttaagcttgttgttgtcnctacttacaacaacgctaatcataatcactttacaaga 264
||||||||||||||||| || || |||||| |||||||||||||||||||||||||||
Sbjct: 1645 ggttttaagcttgttgtggtttttatttacaagaacgctaatcataatcactttacaaga 1586
Query: 265 aattcagaaggaatttatcccaattttttcacaggtaaggactgggttttattataatta 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1585 aattcagaaggaatttatcccaattttttcacaggtaaggactgggttttattataatta 1526
Query: 325 ttattttttttattgacctttgaactttatcttcccttgtaaaggttaatttgccattgc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 ttattttttttattgacctttgaactttatcttcccttgtaaaggttaatttgccattgc 1466
Query: 385 ataagttcatctatctatagagcgttttgtctccggagtgctaaaatatcacaatgtcag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 ataagttcatctatctatagagcgttttgtctccggagtgctaaaatatcacaatgtcag 1406
Query: 445 ataatgggccatatttgtggcttgagaagatcaagaaatgtcaggctttgacggagtctg 504
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 ataatgggccagatttgtggcttgagaagatcaagaaatgtcaggctttgacggagtctg 1346
Query: 505 agatgaaacagctatgcgagatgatgaacgaactcttaatggaagaatcgaatattcagc 564
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1345 agatgaaacagctatgcgagatgatgaaggaactcttaatggaagaatcgaatattcagc 1286
Query: 565 cggctcaatcgccggtgactgtttgtggtgatattcacggacaatttcatgaccttttag 624
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 cggttcaatcgccggtgactgtttgtggtgatattcacggacaatttcatgaccttttag 1226
Query: 625 aactattcagaactgctggtgggtttcctgatcaagtaaactatattgtttcttggtgac 684
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1225 aactattcagaactgctggtgggtttcctgatcaagtaaactatatt-tttcttggtgac 1167
Query: 685 tatgtagatcgaggttattacagtttggagacggtcacacttcttatgtgtgtgaaagtg 744
||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 1166 tatgtagatcgtggttattacagtttggagacgttcacacttcttatgtgtttgaaagtg 1107
Query: 745 aaatatccttacatcaatacttttggtagaggagatattgatttgacgcaaa-tacacaa 803
|||||||||| || | |||||| | ||||||| || ||| | || ||||| |||||||
Sbjct: 1106 aaatatccttccagaattactttggttagaggaaatcatgagtcgaggcaaattacacaa 1047
Query: 804 gctttat-ggctttattacgaatgcttaaacaagtatggctcccaatcggttcggaagt- 861
| ||||| || ||||| | ||||| ||||| |||||||| ||| | ||||| ||||||
Sbjct: 1046 g-tttatgggttttatgaggaatgtttaaataagtatggttccacaacggtttggaagta 988
Query: 862 ttgttgtcaag 872
|||||||||||
Sbjct: 987 ttgttgtcaag 977
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7826
Number of Sequences: 1807
Number of extensions: 7826
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 1030
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1014
effective length of database: 10,329,639
effective search space: 10474253946
effective search space used: 10474253946
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)