BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZE02RM1.SCF screened BAC_end
(1016 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig214 585 e-167
3x_Contig1485 488 e-137
>3x_Contig214
Length = 1381
Score = 585 bits (295), Expect = e-167
Identities = 382/407 (93%), Gaps = 3/407 (0%)
Strand = Plus / Plus
Query: 437 tatattcgaagaaggtttatgagtcgatggctgagttacctgtgcctgaaatcaaaaggg 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 tatattcgaagaaggtttatgagtcgatggctgagttacctgtgcctgaaatcaaaaggg 85
Query: 497 tgactttagaatctttgtatttatcagtaagatccatgggcataaaaaacgttactaagt 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tgactttagaatctttgtatttatcagtaagatccatgggcataaaaaacgttactaagt 145
Query: 557 ttttacagcatggcctagacccgccgcctttatcctcgttggaaaaagcacagcaaatat 616
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 146 ttttacagcaaggcctagacccgccgcctttatcctcgttggaaaaagcagagcaaatat 205
Query: 617 taactacgacaggactaattgatgaaacagactacacgttaacacagctaggtaagtatg 676
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 206 taactacgacaggactaattgatgaaacagacaacacgttaacacagctaggtaagtttg 265
Query: 677 tgagcatgctacctgtcatggatagcacacatggcaaactattgatcctttctatcctgc 736
||||| ||||||||| ||||||||||| |||||| ||||||||||| |||||||||||
Sbjct: 266 tgagcttgctacctggcatggatagcaaacatggtaaactattgattttttctatcctgt 325
Query: 737 tatgttgcaccgacataagtgtgctgacttgactcactattaagcgttggaacctcta-g 795
| |||||||||||||| ||||| | | ||| ||||||||||||||||||||||||||
Sbjct: 326 ttggttgcaccgacataggtgtg-ttaattgcctcactattaagcgttggaacctctata 384
Query: 796 tttatcaatgagtttg-aaattgactcgcaatcagggacatacttgt 841
||||||||||||| || |||| || ||||||||||||| ||||||||
Sbjct: 385 tttatcaatgagtatgaaaatagagtcgcaatcagggaaatacttgt 431
>3x_Contig1485
Length = 9830
Score = 488 bits (246), Expect = e-137
Identities = 283/290 (97%), Gaps = 4/290 (1%)
Strand = Plus / Plus
Query: 48 ttacgcgaaagtaacgatggatctttgattgtttttcttcctggtgttggagaagtgaac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9529 ttacgcgaaagtaacgatggatctttgattgtttttcttcctggtgttggagaagtgaac 9588
Query: 108 cgctgctgcaaaactttgagcaatagctgatctctgacatccttgttacgacattttacc 167
||||||||||||||||||||||| ||||||| |||||| |||||||| ||| ||||||||
Sbjct: 9589 cgctgctgcaaaactttgagcaa-agctgat-tctgac-tccttgtt-cgagattttacc 9644
Query: 168 attgcattccgctttaactcctgatgatcaaaagagagtcttcaaaaaattcaaatccat 227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9645 attgcattccgctttaactcctgatgatcaaaagagagtcttcaaaaaattcaaatccag 9704
Query: 228 aagatagataataatttcaactaacattgctgaaacttccatcactgttgatgactgtgt 287
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9705 aagaaagataataatttcaactaacattgctgaaacttccatcactgttgatgactgtgt 9764
Query: 288 tgctaccattgacaccggtcgtgttaaaacattaaattacgatccttcca 337
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9765 tgctaccattgacaccggtcgtgttaaaacattaaattacgatccttcca 9814
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7435
Number of Sequences: 1807
Number of extensions: 7435
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 2
length of query: 1016
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1000
effective length of database: 10,329,639
effective search space: 10329639000
effective search space used: 10329639000
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)