BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZE03RM1.SCF screened BAC_end
(1022 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1522 1461 0.0
>3x_Contig1522
Length = 7810
Score = 1461 bits (737), Expect = 0.0
Identities = 772/783 (98%), Gaps = 1/783 (0%)
Strand = Plus / Plus
Query: 50 aagcttttaatgcttaaattgggcaaatatgggttcattagtttaacgaaatcagtgtaa 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 aagcttttaatgcttaaattgggcaaatatgggttcattagtttaacgaaatcagtgtaa 903
Query: 110 aaccatgaggcttcttcaaaatggaatagaacccgctcaactgttgataaatcttccggg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 aaccatgaggcttcttcaaaatggaatagaacccgctcaactgttgataaatcttccggg 963
Query: 170 ggaacattgagaatgaatctgacaacaaggtcttcgactgcattctccaaagaaacagtc 229
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 964 ggaacattgagaatgaatctgacaacaaagtcttcgactgcattctccaaagaaacagtc 1023
Query: 230 tcaaacggacgtaacaacggtaatgacatatttcagtctaatttaaatggttaatggtac 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 tcaaacggacgtaacaacggtaatgacatatttcagtctaatttaaatggttaatggtac 1083
Query: 290 agtgttatcttggagaactttaacgagaaggaatgagatagtgtctttaaagtaattcta 349
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 agagttatcttggagaactttaacgagaaggaatgagatagtgtctttaaagtaattcta 1143
Query: 350 tcaaaggtattcttgttactttcctttttttattgcaatgagcaaaacctatcgtggtgc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 tcaaaggtattcttgttactttcctttttttattgcaatgagcaaaacctatcgtggtgc 1203
Query: 410 gtaatgcagtagtcacgtctataatgagctttttggtgggtgtttctgttccttccattt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 gtaatgcagtagtcacgtctataatgagctttttggtgggtgtttctgttccttccattt 1263
Query: 470 caatacgcacacatttctaatactaaagtatattttttctttgatagtttttagtttcaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 caatacgcacacatttctaatactaaagtatattttttctttgatagtttttagtttcaa 1323
Query: 530 caaaactttgtttagttttccaagaaaaccttgttttcctgtacatcgatgtgagggtaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1324 caaaactttgtttagttttccaagaaaaccttgttttcctgtacatcgatgtgagggtaa 1383
Query: 590 caaaaaggagagtccaacgtcaaaatcaacgtacatgctaacattcaacatgctgaacac 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1384 caaaaaggagagtccaacgtcaaaatcaacgtacatgctaacattcaacatgctgaacac 1443
Query: 650 acttagcattagaccgcgatgcagagccgcgttgtttgtagtagcgcacaacagtagagc 709
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1444 acttagcattagacggcgatgcagagccgcgttgtttgtagtagcgcacaacagtagagc 1503
Query: 710 caaaaacacgggcggaaaagtatcaattggcaaacagctgacgttactcaggctgaaaca 769
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1504 caaaaacacgggcggaaaagtatcaattggcaacaagctgacgttactcaagctgaaaca 1563
Query: 770 atcttaatatacatttttttttctgctgacgc-gnacatatagnctttagtaaagggact 828
|||| ||||||||||||||||||||||||||| | |||||||| || |||||||||||||
Sbjct: 1564 atctgaatatacatttttttttctgctgacgcggaacatatagcctctagtaaagggact 1623
Query: 829 gat 831
|||
Sbjct: 1624 gat 1626
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9703
Number of Sequences: 1807
Number of extensions: 9703
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 1022
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1006
effective length of database: 10,329,639
effective search space: 10391616834
effective search space used: 10391616834
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)