BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZE04FM1.SCF screened BAC_end
(1023 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1576 0.0
>3x_Contig1780
Length = 27883
Score = 1576 bits (795), Expect = 0.0
Identities = 874/892 (97%), Gaps = 7/892 (0%)
Strand = Plus / Minus
Query: 87 taaaattttaaatctttattgggtaagacaagggctttccgccctataatattctgaaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25108 taaaattttaaatctttattgggtaagacaagggctttccgccctataatattctgaaat 25049
Query: 147 aggtctgaggagatatctcatccctataccgaaaaagaaaacgttcactcagtctggctt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25048 aggtctgaggagatatctcatccctataccgaaaaagaaaacgttcactcagtctggctt 24989
Query: 207 agagtgataacctttatttttttttcggcttcaggtgtgtcttaagatattcgtcctatc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24988 agagtgataacctttatttttttttcggcttcaggtgtgtcttaagatattcgtcctatc 24929
Query: 267 gagccttgggttagggttgtgtaaaatttgtatatgctcttaaaatccggatctaggatc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24928 gagccttgggttagggttgtgtaaaatttgtatatgctcttaaaatccggatctaggatc 24869
Query: 327 tataattatctgctgttacaccccctcctatagtaaaagcaaccgatggcatctgaccga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24868 tataattatctgctgttacaccccctcctatagtaaaagcaaccgatggcatctgaccga 24809
Query: 387 aagaatgtgttttttttcttttcactgtgtgcttcctccataattgctatttgcttgtgg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24808 aagaatgtgttttttttcttttcactgtgtgcttcctccataattgctatttgcttgtgg 24749
Query: 447 cccttgcttgggcaattggcaaaccacgcgtataccctattctaatcttcttcattttct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24748 cccttgcttgggcaattggcaaaccacgcgtataccctattctaatcttcttcattttct 24689
Query: 507 gatccgctggtgaaggctcagttccttttttttttttctcgatcactctcttgggaactg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24688 gatccgctggtgaaggctcagttccttttttttttttctcgatcactctcttgggaactg 24629
Query: 567 gtgtgcattttctttttagtggtggtattttaatactacgactgcttcttgcattggtat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24628 gtgtgcattttctttttagtggtggtattttaatactacgactgcttcttgcattggtat 24569
Query: 627 atacttttttattatcgggcctatgtgcttgtatgtcatggtgctgccctgttacatatt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24568 atacttttttattatcgggcctatgtgcttgtatgtcatggtgctgccctgttacatatt 24509
Query: 687 ttcttcttcttggtcttcttcttcatcttccactgccgtttttactcactcccatacagt 746
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24508 ttcttcttcttgttcttcttcttcatcttccactgccgtttttactcactcccatacagt 24449
Query: 747 gcgcagtaatagggagacttacggacagatagagaagatagacggtcagcagccagccag 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24448 gcgcagtaatagggagacttacggacagatagagaagatagacggtcagcagccagccag 24389
Query: 807 cc-ataatagcccacacatacatntttttcctctctctattcctctttncgattngggtg 865
|| |||||||||||||||||||| |||||||||||||||||||||||| ||||| || ||
Sbjct: 24388 ccaataatagcccacacatacatttttttcctctctctattcctcttt-cgatttggttg 24330
Query: 866 atacattttggtaaaataatattcatttatatattggatacaag-aagttggccctccac 924
|||||||||| |||||| ||||||||||||||||||||| ||| ||||||||| |||||
Sbjct: 24329 atacattttgttaaaat-atattcatttatatattggatcaaagaaagttggccttccac 24271
Query: 925 ttcactctattttg-tggtagaaactt-actactgtntctca-attagatac 973
||||||||| |||| || ||||||||| |||||||| ||||| |||||||||
Sbjct: 24270 ttcactctactttgttgttagaaacttcactactgtttctcatattagatac 24219
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,262
Number of Sequences: 1807
Number of extensions: 16262
Number of successful extensions: 261
Number of sequences better than 1.0e-20: 1
length of query: 1023
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1007
effective length of database: 10,329,639
effective search space: 10401946473
effective search space used: 10401946473
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)