BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZE04RM1.SCF screened BAC_end
(1027 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1305 1606 0.0
>3x_Contig1305
Length = 9229
Score = 1606 bits (810), Expect = 0.0
Identities = 939/969 (96%), Gaps = 10/969 (1%)
Strand = Plus / Minus
Query: 49 atctgttgatcaggtggaagctctggatttggtggattgaccatgctttctctcatctgt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1638 atctgttgatcaggtggaagctctggatttggtggattgaccatgctttctctcatctgt 1579
Query: 109 tgtcttgctgccattagcatgcgcaagtctcctttaaaagcaacgcgggcggctctcaac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1578 tgtcttgctgccattagcatgcgcaagtctcctttaaaagcaacgcgggcggctctcaac 1519
Query: 169 ccgtttctgtaagctccgagcgcttgagacatctcgtgtttaatatataaggatctaggt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1518 ccgtttctgtaagctccgagcgcttgagacatctcgtgtttaatatataaggatctaggt 1459
Query: 229 gacttagtttgaagctttactatacggttttctttgtcttatgagactcttctctgtcta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1458 gacttagtttgaagctttactatacggttttctttgtcttatgagactcttctctgtcta 1399
Query: 289 gttatcacagttgatattcgccattctcatttatatatatatttttttttgttcatattg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1398 gttatcacagttgatattcgccattctcatttatatatatatttttttttgttcatattg 1339
Query: 349 aagaaaaaagaaaactgcataatatagtaaactgtcgccagagaatgttacaaacgacgg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1338 aagaaaaaagaaaactgcataatatagtaaactgtcgccagagaatgttacaaacgacgg 1279
Query: 409 aaccaacaatcagccgagtgtagcaacatctgcggtacttgatggattgtcccattaagg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1278 aaccaacaatcagccgagtgtagcaacatctgcggtacttgatggattgtcccattaagg 1219
Query: 469 ttactttctaatgcttgcgcgtgtgtctgtatttatgtatgagttcatgtgtaaatttct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1218 ttactttctaatgcttgcgcgtgtgtctgtatttatgtatgagttcatgtgtaaatttct 1159
Query: 529 tgtaagaagaatggtaagatatatgagataaagtattggcatatctcttcatcttatgaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1158 tgtaagaagaatggtaagatatatgagataaagtattggcatatctcttcatcttatgaa 1099
Query: 589 gacaaagctcgagtgatgcataccagtatgcatgaaaacataagatccgaggatggctct 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 gacaaagctcgagtgatgcataccagtatgcatgaaaacataagatccgaggatggctct 1039
Query: 649 gaaatgacagatggagcctaaaaccaccattatatgaaatatttgatgtgagtgtccgac 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 gaaatgacagatggagcctaaaaccaccattatatgaaatatttgatgtgagtgtccgac 979
Query: 709 gaaatcaaattttccaggcgctaacacttctgggaaccctgacccgntaaat-actgcac 767
|||||||||||| ||||||||||||||||||||||| ||||| || ||||| |||||||
Sbjct: 978 gaaatcaaatttcccaggcgctaacacttctgggaa-cctgaacccgtaaatcactgcac 920
Query: 768 cggcaattatag-acatcgctttctacaaaacatacttcaattgaactctgcgaatggcc 826
|||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 919 cggcaa-tatagaacatcgcttctaacaaaacatacttcaattgaactctgcgaatggcc 861
Query: 827 tcatatgcaccaaatttcc-aaacccagtaacaattggaactatcccactcaaaccgaat 885
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tcatatgcaccaaatttccaaaacccagtaacaattggaactatcccactcaaaccgaat 801
Query: 886 gtcacgtaaaacattgctctgatgggtct-aaagtccttggattaaattcttcgcgta-t 943
|||||||||||||||||||||| |||||| |||||| ||| ||||||| ||| ||| |
Sbjct: 800 gtcacgtaaaacattgctctgaagggtctaaaagtctttgagttaaatttgtcgtgtagt 741
Query: 944 ggcaacacagtgca-atagttcccagaataccgg-gaatactgggaaac-tttgaaatgc 1000
| ||||||||||| ||||||||||||||| ||| |||||| | ||||| |||||||||
Sbjct: 740 gcaaacacagtgcagatagttcccagaataacggtgaatacggtgaaacatttgaaatgg 681
Query: 1001 aaaatgtgg 1009
|||||||||
Sbjct: 680 aaaatgtgg 672
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,533
Number of Sequences: 1807
Number of extensions: 10533
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 1027
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1011
effective length of database: 10,329,639
effective search space: 10443265029
effective search space used: 10443265029
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)