BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZE05FM1.SCF screened BAC_end
(1007 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1265 1279 0.0
>3x_Contig1265
Length = 8324
Score = 1279 bits (645), Expect = 0.0
Identities = 733/752 (97%), Gaps = 8/752 (1%)
Strand = Plus / Plus
Query: 87 ccgggtgtctctt-aacaactctgtaattatcaacttgcacttcattcatatttttctaa 145
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4871 ccgggtgtctcttcaacaactctgtaattatcaacttgcacttcattcatatttttctaa 4930
Query: 146 gatcattggactcagtaggaagggtgtgacttcttaacaaggtgcctttttttgtcttgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931 gatcattggactcagtaggaagggtgtgacttcttaacaaggtgcctttttttgtcttgg 4990
Query: 206 acaagttgctctacacatttcccaccaaagtagtcaatgtcctcagtttttgaatgaagg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4991 acaagttgctctacacatttcccaccaaagtagtcaatgtcctcagtttttgaatgaagg 5050
Query: 266 tatagcgttgttatgttagtaattgtgccatttaattcgaaacacgtcctagtgtgacct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5051 tatagcgttgttatgttagtaattgtgccatttaattcgaaacacgtcctagtgtgacct 5110
Query: 326 aaaaccccagaaaacgagagaatacatactccggaattgagtcctgtgatagagccattg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5111 aaaaccccagaaaacgagagaatacatactccggaattgagtcctgtgatagagccattg 5170
Query: 386 ttgatgattgatgttccttgatctgttactgctttatactatgtggtttatgcaaagcat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5171 ttgatgattgatgttccttgatctgttactgctttatactatgtggtttatgcaaagcat 5230
Query: 446 gggacgccactggcaagtttgttcatcttgcgaaggtgtgcagtttattcatagaaatcg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5231 gggacgccactggcaagtttgttcatcttgcgaaggtgtgcagtttattcatagaaatcg 5290
Query: 506 ttttcattttcttcg-aagatgatattatagttatgattataataatacgtaagtgtaaa 564
|||||| |||||||| |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 5291 ttttca-tttcttcgaaagatgatattatagtaatgataataataatacgtaagtgtaaa 5349
Query: 565 agag-aaaaaagaccaggt-acccaatatatataaaaaggg-acagagcaagcgc-acac 620
|||| |||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||
Sbjct: 5350 agagaaaaaaagaccaggtaaccaaatatatataaaaagggaacagagcaagcgcaacac 5409
Query: 621 atacaattctgtatatgtttgtatatagnatgcactcttactcgtcaatcgaccattctt 680
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5410 atacaattctgtatatgtttgtatatagtatgcactcttactcgtcaatcgaccattctt 5469
Query: 681 tggcagtgagacagtacttttttggaggcaaacgccca-cccaagatgacacaacgttgg 739
||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct: 5470 tggcagtgagacagtacttttctggaggcaaacgcacaccccaagatgacacaacgttgg 5529
Query: 740 gcaacggtttcttgtttctttctgccgccagctgtaacatgaggttctttggagcagtag 799
||||||||||||||||||| |||||||| |||||||||||||| | ||||||||||||||
Sbjct: 5530 gcaacggtttcttgtttctctctgccgcaagctgtaacatgagttcctttggagcagtag 5589
Query: 800 gcttgaattggtactgggtgcgagctccgatc 831
|||||||||||||||| |||||||||||||||
Sbjct: 5590 gcttgaattggtactgtgtgcgagctccgatc 5621
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8083
Number of Sequences: 1807
Number of extensions: 8083
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 1007
length of database: 10,358,551
effective HSP length: 16
effective length of query: 991
effective length of database: 10,329,639
effective search space: 10236672249
effective search space used: 10236672249
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)