BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZE05RM1.SCF screened BAC_end
(1021 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1216 1596 0.0
>3x_Contig1216
Length = 5132
Score = 1596 bits (805), Expect = 0.0
Identities = 948/981 (96%), Gaps = 21/981 (2%)
Strand = Plus / Plus
Query: 50 ataactcatccaattctctaaacattcggtgtggaagatgtgtgaacatggtgttatcat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2132 ataactcatccaattctctaaacattcggtgtggaagatgtgtgaacatggtgttatcat 2191
Query: 110 gtaactctgggcatcaatcttatgcgtttcttcagtctcttctacgtaaacaggaacatc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2192 gtaactctgggcatcaatcttatgcgtttcttcagtctcttctacgtaaacaggaacatc 2251
Query: 170 aaccatacaaattggacacacaaagcaattgttttgtgaaccatattccattaaaataga 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 aaccatacaaattggacacacaaagcaattgttttgtgaaccatattccattaaaataga 2311
Query: 230 ttgtggtactggtctgtgataatggtatccatcaggtatcacatgctgtggtaggaacca 289
||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 2312 ttgtggtactggtatgt---------atccatcaggtatcacatgctgtggtaggaacca 2362
Query: 290 tctcgatccaaggagatcttgggaatataggatgagaagttggaaaagcatccaaagtga 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2363 tctcgatccaaggagatcttgggaatataggatgagaagttggaaaagcatccaaagtga 2422
Query: 350 aagtagaacagcaaatcgaacatctatatcatgacggaaaacattggaagggtatgtaaa 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2423 aagtagaacagcaaatcgaacatctatatcatgacggaaaacattggaagggtatgtaaa 2482
Query: 410 cacgtagactattggaataagtctaagtacagatgttccgataatgaaagaccaaagcaa 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2483 aacgtagactattggaataagtctaagtacagatgttccgataatgaaagaccaaagcaa 2542
Query: 470 agggatgcaattggtatcaccgttttggagtgattggtatccgttttggcggcggcgacg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2543 agggatgcaattggtatcaccgttttggagtgattggtatccgttttggcggcggcgacg 2602
Query: 530 tggatcgcttcccttaacagcgttcctgcatatttgtggaacccagtaagagttgagtac 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2603 tggatcgcttcccttaacagcgttcctgcatatttgtggaacccagtaagagttgagtac 2662
Query: 590 aacaagtacactatattcaaatatagttcttatttccttgggccatattaatgaggaaag 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2663 aacaagtacactatattcaaatatagttcttatttccttgggccatattaatgaggaaag 2722
Query: 650 tagaataaatatcgagacaatcaaagtgaaaaaaaatctaccatataacgagctgctgat 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2723 tagaataaatatcgagacaatcaaagtgaaaaaaaatctaccatataacgagctgctgat 2782
Query: 710 ggatgcttcgtctggtatgactcggtttacaacggtatttgcttcaaaacccccccg-ag 768
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 2783 ggatgcttcgtctggtatgactcggtttacaacggtatttgcttcagaacccccccgaag 2842
Query: 769 tagcgtcaaaatacccacaccttgttcattgacttgagaagcgtataccgagatcatata 828
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2843 tagcgtcaaaatacccacaccttgttcattgacttgagaagcgtaaaccgagatcatata 2902
Query: 829 ccgaatttcg-aaacactcgct-aaataaagcatgc-aatgcgctgatacacaa-ggcaa 884
|||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||
Sbjct: 2903 ccgaatttcgaaaacactcgctaaaataaagcatgcaaatgcgctgatacacaagggcaa 2962
Query: 885 ataaagcttttgaagt-gccgagatgcaaggaagt-ttacatatccaagcatccatcccc 942
|||||||| ||||||| || ||||||||||||||| | ||||| |||||||||||||| |
Sbjct: 2963 ataaagctcttgaagtagcggagatgcaaggaagtataacatagccaagcatccatccac 3022
Query: 943 ta-attcatcatgaataagca-caatatga-aatttgttga-tgaacttggagt-tttgt 997
|| |||||||||||||||||| |||||||| | |||||||| |||||||||||| || ||
Sbjct: 3023 tagattcatcatgaataagcaccaatatgagattttgttgactgaacttggagtattggt 3082
Query: 998 gaaattcatttgacttaacaa 1018
|||||||||||||| ||||||
Sbjct: 3083 gaaattcatttgacataacaa 3103
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6880
Number of Sequences: 1807
Number of extensions: 6880
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 1021
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1005
effective length of database: 10,329,639
effective search space: 10381287195
effective search space used: 10381287195
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)