BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZE06FM1.SCF screened BAC_end
(1016 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1017 1608 0.0
3x_Contig905 186 6e-47
>3x_Contig1017
Length = 3431
Score = 1608 bits (811), Expect = 0.0
Identities = 903/925 (97%), Gaps = 7/925 (0%)
Strand = Plus / Plus
Query: 85 cgccaaagagaatgcaacaaatgatgaatatactgtgatgtagtgattgctcattgaata 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 cgccaaagagaatgcaacaaatgatgaatatactgtgatgtagtgattgctcattgaata 1358
Query: 145 agtagcgttattcgaagtaaagaatagaaaatcacaagactggggttaaagctgcatcaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 agtagcgttattcgaagtaaagaatagaaaatcacaagactggggttaaagctgcatcaa 1418
Query: 205 ataggcaaatgtgcggcgttttttggtttgcgcgcacggattatctaacaagtttttcca 264
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 1419 ataggcaaatgtgcggcgtatcatggtttgcgcgcacggattatctaacaagtttttcca 1478
Query: 265 ccacttaaaaattgagggagcgttccgcataattataattgctttttttgctgacatcgg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 ccacttaaaaattgagggagcgttccgcataattataattgctttttttgctgacatcgg 1538
Query: 325 catcctgacttcttcttttgtagtgctctatttgtgagtggtgttaaaaaaacattcaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 catcctgacttcttcttttgtagtgctctatttgtgagtggtgttaaaaaaacattcaaa 1598
Query: 385 gtggcatgctattctaaggcaatatggaaacatgagagttcctctttgaatatctggagc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 gtggcatgctattctaaggcaatatggaaacatgagagttcctctttgaatatctggagc 1658
Query: 445 tccagcctattaggcaagttttgtcagactgcttgtatggaagaggttttcgggaaacca 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 tccagcctattaggcaagttttgtcagactgcttgtatggaagaggttttcgggaaacca 1718
Query: 505 tattcgactcggtagagtaagagatatgtctgatttatcctcatatgaaaggtttttaag 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 tattcgactcggtagagtaagagatatgtctgatttatcctcatatgaaaggtttttaag 1778
Query: 565 aatataagaatcaagtatcgaaatatttgcaaaattttggcactatggccgagtggttaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 aatataagaatcaagtatcgaaatatttgcaaaattttggcactatggccgagtggttaa 1838
Query: 625 ggcgacagacttgaaatctgttgggctctgcccgcgctggttcaaatcctgctggtgtcg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 ggcgacagacttgaaatctgttgggctctgcccgcgctggttcaaatcctgctggtgtcg 1898
Query: 685 ttattttttggaaataactttttttaaactagac-ataagcgtttagccgggtaatattt 743
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 1899 ttattttttggaaataacttttttt-aactagacaataagcgtttagccgggtaatattt 1957
Query: 744 atttatatatatcggctccttccatggagctgataccgtaagctcacctaatctgcatct 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 atttatatatatcggctccttccatggagctgataccgtaagctcacctaatctgcatct 2017
Query: 804 agataatcgggtatgattaacagcgacatagctatgtgattatctgccccattacttaaa 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2018 agataatcgggtatgattaacagcgacatagctatgtgattatctgccccattactt-aa 2076
Query: 864 agtaagg-ttcactttccgactaaggacgaatgacccaggacac-ggacgctcacacggn 921
||||||| ||||||||| ||||||||||||||||| || ||||| | ||||||||||||
Sbjct: 2077 agtaaggtttcactttcggactaaggacgaatgacacaagacacagaacgctcacacggt 2136
Query: 922 tgaaaca-tttttttcctgatccttttgaccctggttggtgtcccttctttacgatggga 980
||||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct: 2137 tgaaacattttttttcctgatccttttgaccctgtttgttgtccctcttttacgatggga 2196
Query: 981 ggaatgnaatcttccgccattaaac 1005
|||| |||| |||||||||||||
Sbjct: 2197 -gaattgaatcatccgccattaaac 2220
>3x_Contig905
Length = 2723
Score = 186 bits (94), Expect = 6e-47
Identities = 97/98 (98%)
Strand = Plus / Minus
Query: 596 aaattttggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgc 655
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1804 aaatttaggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgc 1745
Query: 656 ccgcgctggttcaaatcctgctggtgtcgttatttttt 693
||||||||||||||||||||||||||||||||||||||
Sbjct: 1744 ccgcgctggttcaaatcctgctggtgtcgttatttttt 1707
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6832
Number of Sequences: 1807
Number of extensions: 6832
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 2
length of query: 1016
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1000
effective length of database: 10,329,639
effective search space: 10329639000
effective search space used: 10329639000
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)