BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC1ZE06RM1.SCF screened BAC_end
         (1000 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1224                                                        1590   0.0  

>3x_Contig1224 
          Length = 5948

 Score = 1590 bits (802), Expect = 0.0
 Identities = 919/945 (97%), Gaps = 12/945 (1%)
 Strand = Plus / Plus

                                                                        
Query: 40   ctttgaagtccaaatcacgaaccataagccgactgaacataaatttgcatctgaagagtc 99
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3891 ctttgaagtccaaatcacgaaccataagccgactgaacataaatttgcatctgaagagtc 3950

                                                                        
Query: 100  aaattgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgtt 159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3951 aaattgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgtt 4010

                                                                        
Query: 160  caaattccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggact 219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4011 caaattccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggact 4070

                                                                        
Query: 220  attaatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcgat 279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4071 attaatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcgat 4130

                                                                        
Query: 280  tttggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaat 339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4131 tttggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaat 4190

                                                                        
Query: 340  aaatgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaag 399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4191 aaatgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaag 4250

                                                                        
Query: 400  cgacaaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataa 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4251 cgacaaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataa 4310

                                                                        
Query: 460  tcttgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaat 519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4311 tcttgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaat 4370

                                                                        
Query: 520  aatcgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaataa 579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4371 aatcgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaataa 4430

                                                                        
Query: 580  aacgaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggttt 639
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4431 aacgaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggttt 4490

                                                                        
Query: 640  taggtttat-acagaaaaataccaaaaagtggcaacgtgaatggtccaaattctatggaa 698
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4491 taggtttatcacagaaaaataccaaaaagtggcaacgtgaatggtccaaattctatggaa 4550

                                                                        
Query: 699  attcgtgatcaaatggtaccaagtacgtgattcaatataggttttccgtaaggattttga 758
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4551 attcgtgatcaaatggtaccaagtacgtgattcaatataggttttccgtaaggattttga 4610

                                                                        
Query: 759  ccattcaatctgtgtgaactttagatatttcatatcccgcggtagatcggcatangtggt 818
            |||||||||||||||||||||   ||||||||||||||||||||||||||||||  ||||
Sbjct: 4611 ccattcaatctgtgtgaacttagaatatttcatatcccgcggtagatcggcatagttggt 4670

                                                                        
Query: 819  acccatctttca-tttaaactggttaatggnttttaatgaccagaaacaatgat--atat 875
            ||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||  ||||
Sbjct: 4671 acc-atctttcaatttaaactggttaatggtttttaatgaccagaaacattgattaatat 4729

                                                                        
Query: 876  cgncgnatcctata-tatgggaaatgtcggtactttatttcca-gttatt-gaaat-gac 931
            || || |||||||| ||||||||  |||| ||||||  ||||| |||||| ||||| |||
Sbjct: 4730 cgtcgtatcctataatatgggaatggtcgttacttttattccaagttatttgaaattgac 4789

                                                         
Query: 932  aaa-ttc-tataagggatta-caacgtgttggagaaaacaaggag 973
            ||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 4790 aaaattcatataagggattaacaacgtgttggagaaaacaaggag 4834


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7832
Number of Sequences: 1807
Number of extensions: 7832
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 1000
length of database: 10,358,551
effective HSP length: 16
effective length of query: 984
effective length of database: 10,329,639
effective search space: 10164364776
effective search space used: 10164364776
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)