BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZE07FM1.SCF screened BAC_end
(1049 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig893 722 0.0
3x_Contig1340 458 e-128
>3x_Contig893
Length = 2804
Score = 722 bits (364), Expect = 0.0
Identities = 473/500 (94%), Gaps = 7/500 (1%)
Strand = Plus / Plus
Query: 322 gtccaagtcttacctgtgcgtaattcatagttctctttttctaattcgtcaaggcgtgtt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2262 gtccaagtcttacctgtgcgtaattcatagttctctttttctaattcgtcaaggcgtgtt 2321
Query: 382 ctgagctcttgattttcgtccataacttccagatttctttccattgttctattcaaatct 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2322 ctgagctcttgattttcgtccataacttccagatttctttccattgttctattcaaatct 2381
Query: 442 gctttcaaatctgtgggaatttcagcatctggattaggtaacgtttgtttataaagttca 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2382 gctttcaaatctgtgggaatttcagcatctggattaggtaacgtttgtttataaagttca 2441
Query: 502 cgttccagttgtttcttcaaatcttctatctctagaaataaatccttattttcgtcctga 561
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2442 cgttccagttgtttcttcaaatcttctatctctagtaataaatccttattttcgtcctga 2501
Query: 562 agagtttccatccgaagtctggtttcaattagttcattggcaatagtgatatgctctctg 621
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2502 agagtttccatccgaagtctgttttcaattagttcattggcaatagtgatatgctctctg 2561
Query: 622 tttaatagcgaaaagccattttctaa-tttcttcaactctttttgaagctggctgttttt 680
|||||||||||| || |||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 2562 tttaatagcgaatagtcattttctaattttcttcaactctttttgaagctgtctgtttta 2621
Query: 681 atttctttgttccttatattggtgtttctttttccgctttcaatttgtgaatctaatcgt 740
| |||||||||||| |||||| || ||| ||||||| || ||| |||||||||| |||||
Sbjct: 2622 aattctttgttcctcatattgttg-ttccttttccgtttccaacttgtgaatctcatcgt 2680
Query: 741 acttttttaacgtaacgctcc-aattgcattggagttatatttgatttcccaccgaattg 799
|| | ||| |||||||||||| ||||||| |||||||| ||||||||| ||| |||||
Sbjct: 2681 ac-tctttcacgtaacgctccaaattgcaatggagtta-atttgattt-ccaacgaatca 2737
Query: 800 gagatgaattctatcaatat 819
|||||||| |||||||||||
Sbjct: 2738 gagatgaa-tctatcaatat 2756
>3x_Contig1340
Length = 7156
Score = 458 bits (231), Expect = e-128
Identities = 234/235 (99%)
Strand = Plus / Minus
Query: 87 aacaaattcatttaatcaatgtatatgttctgaaataccaggttctggtggcaaaagacg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4711 aacaaattcatttaatcaatgtatatgttctgaaataccaggttctggtggcaaaagacg 4652
Query: 147 atttaaaagtgagaagaacacggtagtccatctgtctgtgattaatactagactgtgcaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4651 atttaaaagtgagaagaacacggtagtccatctgtctgtgattaatactagactgtgcaa 4592
Query: 207 ttggtaccaaaacccttgtaaagataagcgagctggaaaagcacaacgtttttataggta 266
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4591 ttggtaccaaaacccttgtaaagagaagcgagctggaaaagcacaacgtttttataggta 4532
Query: 267 ttatattgaggaaacattgtttgagattggcaaagaaaatagacatacatataaa 321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4531 ttatattgaggaaacattgtttgagattggcaaagaaaatagacatacatataaa 4477
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,294
Number of Sequences: 1807
Number of extensions: 10294
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 2
length of query: 1049
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1033
effective length of database: 10,329,639
effective search space: 10670517087
effective search space used: 10670517087
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)