BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZE08FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig715 1302 0.0
>3x_Contig715
Length = 2727
Score = 1302 bits (657), Expect = 0.0
Identities = 715/725 (98%), Gaps = 7/725 (0%)
Strand = Plus / Plus
Query: 29 tggttggctgttcgaaaactcattgtaagggcagcgttatcggtctttgtgataatttca 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1397 tggttggctgttcgaaaactcattgtaagggcagcgttatcggtctttgtgataatttca 1456
Query: 89 actcagcacatgttacttcgagaaacgggaacgcgcattaaaaggtcgggtaaccctcag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1457 actcagcacatgttacttcgagaaacgggaacgcgcattaaaaggtcgggtaaccctcag 1516
Query: 149 ttatgaggccacagctaggtgagttgaaagcagacagcaccattgaacagaagctaccat 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1517 ttatgaggccacagctaggtgagttgaaagcagacagcaccattgaacagaagctaccat 1576
Query: 209 ctccaagctaacattgacattctatagtcaaaaagaagttgctttatgtatgttcctgta 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1577 ctccaagctaacattgacattctatagtcaaaaagaagttgctttatgtatgttcctgta 1636
Query: 269 tgtacaaatccgtggcaaccacaactttttatgcggtaaagaattaaagtattatgatat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1637 tgtacaaatccgtggcaaccacaactttttatgcggtaaagaattaaagtattatgatat 1696
Query: 329 tagaaattaatgttactatgtgaaataaatgttgttagagaggagcttgctctgtgagtg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1697 tagaaattaatgttactatgtgaaataaatgttgttagagaggagcttgctctgtgagtg 1756
Query: 389 aacgataactatagatagtccgttttatagatccagtctgctccaattagatctgctcct 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1757 aacgataactatagatagtccgttttatagatccagtctgctccaattagatctgctcct 1816
Query: 449 tgatcctttgcgagtctgaaccatttagctgctcgtcttaaatcttttttcctatttgga 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1817 tgatcctttgcgagtctgaaccatttagctgctcgtcttaaatcttttttcctatttgga 1876
Query: 509 gtcgtctttgaccaaatggtaccgcataaacacatagaatcaacgtgtcccaacgatgct 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1877 gtcgtctttgaccaaatggtaccgcataaacacatagaatcaacgtgtcccaacgatgct 1936
Query: 569 gcatattccaaacatttcagacccttccattcatgagcagtgacaccgtatcccttcata 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1937 gcatattccaaacatttcagacccttccattcatgagcagtgacaccgtatcccttcata 1996
Query: 629 taagctataccacattcgtacagagccggggcagctgcgtcattctgtagagttgg-agc 687
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct: 1997 taagctataccacattcgtacagagcgggggcagctgcgtcattctgtagagatggaagc 2056
Query: 688 ggtt-acgtatttc-aatggatct-tatttgcatg-aatacgct-gttttg-aatccttg 741
|||| |||||| || ||||||||| |||||||||| |||||||| |||||| ||||||||
Sbjct: 2057 ggttcacgtatctcaaatggatctatatttgcatgtaatacgctggttttgaaatccttg 2116
Query: 742 atacc 746
|||||
Sbjct: 2117 atacc 2121
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5665
Number of Sequences: 1807
Number of extensions: 5665
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)