BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZE08RM1.SCF screened BAC_end
(1055 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1398 0.0
>3x_Contig1698
Length = 21001
Score = 1398 bits (705), Expect = 0.0
Identities = 777/793 (97%), Gaps = 6/793 (0%)
Strand = Plus / Minus
Query: 45 cttatcatcagatttgcctacgttttctaagatatccaagagtttttggatatcagagtt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10299 cttatcatcagatttgcctacgttttctaagatatccaagagtttttggatatcagagtt 10240
Query: 105 ttcgtcgaaattcaaggaatccaaccttgttgcgttagtctcgattgcaatttcgtttcg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10239 ttcgtcgaaattcaaggaatccaaccttgttgcgttagtctcgattgcaatttcgtttcg 10180
Query: 165 cagcctcccgcttgattctgtttgagatattgaagagtttgatgatccaaactgagagaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10179 cagcctcccgcttgattctgtttgagatattgaagagtttgatgatccaaactgagagaa 10120
Query: 225 cgcagttgagacatgcgagactatattaacatttctgtcatcgtggatatcgtattggaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10119 cgcagttgagacatgcgagactatattaacatttctgtcatcgtggatatcgtattggaa 10060
Query: 285 atttggcttcaattcgtccgtatgtttcatgatcaactcagtcattttaccatggaaatc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10059 atttggcttcaattcgtccgtatgtttcatgatcaactcagtcattttaccatggaaatc 10000
Query: 345 gagagtagacattagttttaaaagttgtgcgcgtctaagcccagctggattattgcctaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9999 gagagtagacattagttttaaaagttgtgcgcgtctaagcccagctggattattgcctaa 9940
Query: 405 atttctcatctttgtgaatatcctcaaagcgtggtccaaatgctcgtacgtttggtcatg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9939 atttctcatctttgtgaatatcctcaaagcgtggtccaaatgctcgtacgtttggtcatg 9880
Query: 465 gataccgaatgcagcgttgaacaatatcaacgtacaagcagatgtaaaaatgtattctct 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9879 gataccgaatgcagcgttgaacaatatcaacgtacaagcagatgtaaaaatgtattctct 9820
Query: 525 atccatataaccaaataatgcgaccatgttctgatccattagagcccacaaagacctaat 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9819 atccatataaccaaataatgcgaccatgttctgatccattagagcccacaaagacctaat 9760
Query: 585 agtattgatggatccttgtaaagaacaattcaacaaggatgagattgttcttgagtagtt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9759 agtattgatggatccttgtaaagaacaattcaacaaggatgagattgttcttgagtagtt 9700
Query: 645 cttcaaattaatatatgcattagttactttcaattgtttgagctgattggatgcgaaatg 704
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 9699 cttcaaattaatatatgcattagttacttcgaattgtttgagctgaatggatgcgaaatg 9640
Query: 705 gaacatcaatggttctgatagcccaaattcatacctttggaaatattcagtgaaaacgtt 764
||||| |||||| |||||||| ||||||||||||| |||||||||||||||||||||| |
Sbjct: 9639 gaacaacaatgg-tctgatag-ccaaattcatacc-ttggaaatattcagtgaaaacg-t 9584
Query: 765 tggtacaaagtctttgaaattttgagattctttttgagttgaattcactggtagaaaatc 824
|||||||||||| ||||||| ||||||||| |||||||| ||| ||| ||||||||||
Sbjct: 9583 tggtacaaagtc-ttgaaatcttgagattc-ttttgagtgaaatcaacttgtagaaaatc 9526
Query: 825 agaaagatgcgtt 837
|||||||||||||
Sbjct: 9525 agaaagatgcgtt 9513
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8793
Number of Sequences: 1807
Number of extensions: 8793
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 1055
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1039
effective length of database: 10,329,639
effective search space: 10732494921
effective search space used: 10732494921
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)