BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZE09FM1.SCF screened BAC_end
(1034 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1802 1477 0.0
>3x_Contig1802
Length = 45229
Score = 1477 bits (745), Expect = 0.0
Identities = 889/923 (96%), Gaps = 11/923 (1%)
Strand = Plus / Minus
Query: 86 ccaattattcgggtccaacttcaagtggtgtgcgagacaaaaagttttgggacctttcaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40411 ccaattattcgggtccaacttcaagtggtgtgcgagacaaaaagttttgggacctttcaa 40352
Query: 146 aaattgtgtaacgattttcttccaacttcacttgtaaagcattgcatatatatgtgatat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40351 aaattgtgtaacgattttcttccaacttcacttgtaaagcattgcatatatatgtgatat 40292
Query: 206 tattcacttcgaaccagccaatttttcagaaaatgttaataccatctaggtttcttgttc 265
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 40291 tattcacttcgaaccagccaattcgtcagaaaatgttaataccatctaggtttcttgttc 40232
Query: 266 gggcttcttcataattattgcaattcatctcgcctattagtaactcgggtgaaatctatt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40231 gggcttcttcataattattgcaattcatctcgcctattagtaactcgggtgaaatctatt 40172
Query: 326 ttgtgattataggtttcaccatttcaacaagatgatcatgagtcaagataaatctcaaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40171 ttgtgattataggtttcaccatttcaacaagatgatcatgagtcaagataaatctcaaaa 40112
Query: 386 ctcgcttcataaagtttctccatttaagtcttggaaacttactctgattaaattcctcat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40111 ctcgcttcataaagtttctccatttaagtcttggaaacttactctgattaaattcctcat 40052
Query: 446 cttattttgtgtcttctttggattgatcagctgctatcatttttacagagaagctcaaag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40051 cttattttgtgtcttctttggattgatcagctgctatcatttttacagagaagctcaaag 39992
Query: 506 agaagcgggacatactggcgctattaacgttgtagacaaaagtgttgaacatcctaatta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39991 agaagcgggacatactggcgctattaacgttgtagacaaaagtgttgaacatcctaatta 39932
Query: 566 taatctcccaaaatacactgacactgttagcactgctgangaagacggtggagtgtctat 625
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 39931 taatctcccaaaatacactgacactgttagcactgctgaggaagacggtggagtgtctat 39872
Query: 626 tttcgtgcttgggaagcgtaatcattggaactggattggaaatgcagcagttgctggatt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39871 tttcgtgcttgggaagcgtaatcattggaactggattggaaatgcagcagttgctggatt 39812
Query: 686 cttgatatctgcaggagctctaacaggtggttgggcagtggcttcatgtatgactattgc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39811 cttgatatctgcaggagctctaacaggtggttgggcagtggcttcatgtatgactattgc 39752
Query: 746 aggccctgcatgctgggtcggtattgctgtanctattgtttgct-gtactgttggcacta 804
||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||||||
Sbjct: 39751 aggccctgcatgctgggtcggtattgctgtagcta-tggttgctggtactgttggcacta 39693
Query: 805 tctttgcaacggctgcgggaagacctgaaaacgg-tggactttatccgacgcaaaacgtg 863
||||||||||||||||||||||||||| |||||| ||||||| ||| ||||||||||||
Sbjct: 39692 tctttgcaacggctgcgggaagacctggaaacggttggacttcatcgaacgcaaaacgtg 39633
Query: 864 aaga-tccagttcattcagctttgga-aatcta-atttctttaggttgaaaac-gttgac 919
|||| ||||||||||||||||||||| | |||| || |||| |||||||| || || ||
Sbjct: 39632 aagagtccagttcattcagctttggagattctacatatcttaaggttgaagacggtagag 39573
Query: 920 ttgatcgggtgaa-tctaccatta-tgttgccggtttgaccttcaaa-gactttgggaag 976
|||||| ||||| |||||||||| || ||| ||||||||||||||| |||||||||| |
Sbjct: 39572 ctgatcgtgtgaattctaccattactgatgcgggtttgaccttcaaaggactttgggagg 39513
Query: 977 ggtttgaaacccgtttcgttgaa 999
|| ||| | |||||||||||||
Sbjct: 39512 tgtatgata-ccgtttcgttgaa 39491
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7022
Number of Sequences: 1807
Number of extensions: 7022
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 1034
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1018
effective length of database: 10,329,639
effective search space: 10515572502
effective search space used: 10515572502
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)