BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZE10FM1.SCF screened BAC_end
(1028 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1701 1513 0.0
>3x_Contig1701
Length = 10926
Score = 1513 bits (763), Expect = 0.0
Identities = 891/920 (96%), Gaps = 11/920 (1%)
Strand = Plus / Minus
Query: 86 ctgcttgtgttggtaaactgctcaactatacaaaagacttttttttgtatgaaattctat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 ctgcttgtgttggtaaactgctcaactatacaaaagacttttttttgtatgaaattctat 1042
Query: 146 gcaggaaggtgaataaacgttgttgaacattgttcgagcaatattcccctgcagtaaaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 gcaggaaggtgaataaacgttgttgaacattgttcgagcaatattcccctgcagtaaaat 982
Query: 206 atagaggcgtagaaaagcatatataaggtgcgaagtgttgttggcgccccagtttcgcct 265
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 981 atagaggcgtagaaaagcatatagaaggtgcgaagtgttgttggcgccccagtttcgcct 922
Query: 266 gtggacactgtgaacaattttaagatgacggtaaaaaaaaaagatgaaaataaaacacga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gtggacactgtgaacaattttaagatgacggtaaaaaaaaaagatgaaaataaaacacga 862
Query: 326 aaaagcaaaagcgaaccctgaaaagattacaaataatgttcctgatccagcagtggataa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aaaagcaaaagcgaaccctgaaaagattacaaataatgttcctgatccagcagtggataa 802
Query: 386 gatccctgctataggctcagctactgtctcttatcaattagaagtaatgtccaagttcgc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gatccctgctataggctcagctactgtctcttatcaattagaagtaatgtccaagttcgc 742
Query: 446 ggacttcgctttatttacgggatgctattaaacagcaatataactaacccaattatcaag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggacttcgctttatttacgggatgctattaaacagcaatataactaacccaattatcaag 682
Query: 506 gcaatagcaccataaacgactgagacgtagttcatgttggaagaggtaactggtttcaca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaatagcaccataaacgactgagacgtagttcatgttggaagaggtaactggtttcaca 622
Query: 566 taagggaaagacaacataacaacacaaaacaatgcgtatgctactgttagtgtatgtggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagggaaagacaacataacaacacaaaacaatgcgtatgctactgttagtgtatgtggg 562
Query: 626 atcacaccccattttttaagccacatggagtatttatttgg-acaatatccgtctcattt 684
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 atcacaccccattttttaagccacatggagtatttatttggtacaatatccgtctcattt 502
Query: 685 gcagtttccctttcacactttgcaataaatttgttcctgcctcttaccagtanaatcaaa 744
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 501 gcagtttccctttcacactttgcaataaatttgttcctgcctctaaccagtaaaatcaaa 442
Query: 745 ctaggaatagcatatgacacaattaaaagcgttactgcagcagatacgatagcattgaaa 804
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 ctaggaatagcatatgacacaattaaaagcgtcactgcagcagatacgatagcattgaaa 382
Query: 805 gccttattactgcccnacattatgcatccaatgatcacgactagtgcttgtgagaagaa- 863
|||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccttagtactgcccaacataatgcatccaatgatcacgactagtgcttgtgagaagaag 322
Query: 864 tgcgccatat-aaggaactttggttgac-gaattgatagttgcaaacctagctgtttcaa 921
|||| ||||| |||||||||| |||||| |||| |||||||||||||||||||||| |||
Sbjct: 321 tgcg-catataaaggaacttt-gttgacggaatcgatagttgcaaacctagctgttacaa 264
Query: 922 atcccggat-agaattcatttggccttagggttt-cattnctttcgaaagcgacc-caac 978
|| |||||| ||| | ||| |||||| | ||||| |||| || |||| ||||||| ||||
Sbjct: 263 at-ccggataagattccatctggcctcatggtttccatttctctcgatagcgaccacaac 205
Query: 979 cttcttga-tgccatgttcc 997
||||||| |||||||||||
Sbjct: 204 attcttgattgccatgttcc 185
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7476
Number of Sequences: 1807
Number of extensions: 7476
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 1028
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1012
effective length of database: 10,329,639
effective search space: 10453594668
effective search space used: 10453594668
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)