BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZE10RM1.SCF screened BAC_end
(1014 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1598 1437 0.0
>3x_Contig1598
Length = 11902
Score = 1437 bits (725), Expect = 0.0
Identities = 811/830 (97%), Gaps = 8/830 (0%)
Strand = Plus / Minus
Query: 48 cttctacgcaatcattcttggcaattggaacacgctttgggtagatatttcgacgacaat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11700 cttctacgcaatcattcttggcaattggaacacgctttgggtagatatttcgacgacaat 11641
Query: 108 tggaaagaaaatctagactttgcaccacagcctacacccgctcaaaacacaattcctgtc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11640 tggaaagaaaatctagactttgcaccacagcctacacccgctcaaaacacaattcctgtc 11581
Query: 168 caacaatcacaatctgatgagcgccagatcctggaagatacgcgttcagaattaccaata 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11580 caacaatcacaatctgatgagcgccagatcctggaagatacgcgttcagaattaccaata 11521
Query: 228 tcactgagaatcccaaacattttggagaacccgtttggaatggtacctaaactacccttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11520 tcactgagaatcccaaacattttggagaacccgtttggaatggtacctaaactacccttt 11461
Query: 288 attcacagattaccatacaattataaagaaaaattccaaatcatcggattaaacggacag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11460 attcacagattaccatacaattataaagaaaaattccaaatcatcggattaaacggacag 11401
Query: 348 ccaaatgctactgatgtatactcgcgcaattctgtattacttgccgtcttatttttgccg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11400 ccaaatgctactgatgtatactcgcgcaattctgtattacttgccgtcttatttttgccg 11341
Query: 408 aatttaatagttaggcttagcgtgcatatgttttcatggcttggcattctaatctcgtat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11340 aatttaatagttaggcttagcgtgcatatgttttcatggcttggcattctaatctcgtat 11281
Query: 468 gcactaggtcagaatatggcaaaatcaaaggcttcatataattgggtaatcccgcagaaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11280 gcactaggtcagaatatggcaaaatcaaaggcttcatataattgggtaatcccgcagaaa 11221
Query: 528 cctcaggtggacagaaaacctgaagatacatttgcngatataagggaaacatgtggtgaa 587
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 11220 cctcaggtggacagaaaacctgaagatacatttgcggatataagggaaacatgtggtgaa 11161
Query: 588 aatgctgaagaacttttgtctttatgctctatgaaagagctac-atganatatttgatga 646
||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct: 11160 aatgctgaagaacttttgtctttatgctctatg-aagagctacaatgaaatatttgatga 11102
Query: 647 atgcgaatcg-aatacaagtttatgcttttgttattcttgggaacaataactggagaaga 705
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 11101 atgcgaatcgaaatacaagtttatgcttttgttattcttgggaccaataactggagaaga 11042
Query: 706 ag-aaaaatttgtcatagctcg-aaacattnctaacgcactttttatcccatccatcaac 763
|| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 11041 agaaaaaatttgtcatagctcgaaaacattcttaacgcactttttatcccatccatcaac 10982
Query: 764 tattgcactttttaaaactcatagcgacaac-tgggaattttcattaggacagttcaaga 822
|||||||||||| |||||||||||||||||| ||| ||| | ||| |||||||| |||||
Sbjct: 10981 tattgcacttttcaaaactcatagcgacaacttggaaatatacatcaggacagtccaaga 10922
Query: 823 tccctgaatgttgggcactggcaaaacaact-aaattaaaatacacgtta 871
| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 10921 t-cctgaatgttgggcactggcaaaacaactaaaattaaaatacacgtta 10873
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7533
Number of Sequences: 1807
Number of extensions: 7533
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 1014
length of database: 10,358,551
effective HSP length: 16
effective length of query: 998
effective length of database: 10,329,639
effective search space: 10308979722
effective search space used: 10308979722
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)