BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZE12FM1.SCF screened BAC_end
(1006 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1518 1568 0.0
>3x_Contig1518
Length = 11021
Score = 1568 bits (791), Expect = 0.0
Identities = 840/852 (98%), Gaps = 5/852 (0%)
Strand = Plus / Minus
Query: 92 ggacagtctacgtttacattcatcgtagaatccgtacatcttggtgacgtttgcagattc 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4656 ggacagtctacgtttacattcatcgtagaatccgtacatcttggtgacgtttgcagattc 4597
Query: 152 atggttaccacgtaacatgaagaaattatctgggtacttaatcttgtaacagagcaaaag 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4596 atggttaccacgtaacatgaagaaattatctgggtacttaatcttgtaacagagcaaaag 4537
Query: 212 catgatagtttccat-gantgtttacctctatcgacgtaatcaccaaggaaaaggtaatt 270
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4536 catgatagtttccaacgattgtttacctctatcgacgtaatcaccaaggaaaaggtaatt 4477
Query: 271 cgtgtcaggaggaacaccagataacctcaagatacgtaataaatcagtaaactgaccatg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4476 cgtgtcaggaggaacaccagataacctcaagatacgtaataaatcagtaaactgaccatg 4417
Query: 331 aacatcaccgacaactttgattggagcctgtaatttcaacagagaaggctggttcaagaa 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4416 aacatcaccgacaactttgattggagcctgtaatttcaacagagaaggctggttcaagaa 4357
Query: 391 gatttctctggccatggtgcaaaccaattggatttcccaagaacggaatgggaagtcctc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4356 gatttctctggccatggtgcaaaccaattggatttcccaagaacggaatgggaagtcctc 4297
Query: 451 tgagtggtaaattctagattcaccaaggtacaacaatttgtcaatcatatcgtcgatgtt 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4296 tgagtggtaaattctagattcaccaaggtacaacaatttgtcaatcatatcgtcgatgtt 4237
Query: 511 cacatgatccgtacaactcaaatcatgcgaggaacgtctcaagatgatcggcttagaaga 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4236 cacatgatccgtacaactcaaatcatgcgaggaacgtctcaagatgatcggcttagaaga 4177
Query: 571 ccgttggtttggaatcttagaaccttttctgaacgaggacgagacagaagaaggagcagt 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4176 ccgttggtttggaatcttagaaccttttctgaacgaggacgagacagaagaaggagcagt 4117
Query: 631 atcattttcctctttgatcggtggtaaagacattggagagtgatcaaaatgagaatccga 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4116 atcattttcctctttgatcggtggtaaagacattggagagtgatcaaaatgagaatccga 4057
Query: 691 aaggaacggcgatgaagtggtagtaggtaaagacccaccgncaccaccgctgccaacgat 750
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4056 aaggaacggcgatgaagtggtagtaggtaaagacccaccgccaccaccgctgccaacgat 3997
Query: 751 ctgaggaacagatttcatcgaaaaggatgactccgatccagtggtagaaacgctagacgt 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3996 ctgaggaacagatttcatcgaaaaggatgactccgatccagtggtagaaacgctagacgt 3937
Query: 811 attagaaatagagatagggtatttgctcaaatccctagcgagggacatatcaatatcaag 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3936 attagaaatagagatagggtatttgctcaaatccctagcgagggacatatcaatatcaag 3877
Query: 871 ccccatag-tattcggcgtaaatgagaatatttgtctgctcttgccagacactag--tat 927
||||||| ||||||||||| |||| ||||||||||||||||| |||||||||| |||
Sbjct: 3876 -cccatagttattcggcgtagatgaagatatttgtctgctcttggcagacactaggttat 3818
Query: 928 tgtagttattat 939
||||||||||||
Sbjct: 3817 tgtagttattat 3806
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5793
Number of Sequences: 1807
Number of extensions: 5793
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 1006
length of database: 10,358,551
effective HSP length: 16
effective length of query: 990
effective length of database: 10,329,639
effective search space: 10226342610
effective search space used: 10226342610
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)