BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF01FM1.SCF screened BAC_end
(1006 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1059 0.0
>3x_Contig1801
Length = 57606
Score = 1059 bits (534), Expect = 0.0
Identities = 636/662 (96%), Gaps = 6/662 (0%)
Strand = Plus / Plus
Query: 89 taagctacctcagcgtagtgaattaccaagaaaactacaagatttgggtctcaagcctgc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20531 taagctacctcagcgtagtgaattaccaagaaaactacaagatttgggtctcaagcctgc 20590
Query: 149 tagtgtggatcctgctacgatcaagaatgagcaaaccacaaggaaagaggtcaagaaacg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20591 tagtgtggatcctgctacgatcaagaatgagcaaaccacaaggaaagaggtcaagaaacg 20650
Query: 209 tagatcaagaaagggtaaattttcttatacacatatggctggtatattgagagattattc 268
||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct: 20651 tagatcaagaaagggtaaagttaccaatacacatatggctggtatattgagagattattc 20710
Query: 269 cgatagggtatgaagatacctactttttataatgaacgtattctacatataacccaaatt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20711 cgatagggtatgaagatacctactttttataatgaacgtattctacatataacccaaatt 20770
Query: 329 aaaatatgaccagtgcgttatatataaataatatacagaaagaccagaacgagtgctcta 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20771 aaaatatgaccagtgcgttatatataaataatatacagaaagaccagaacgagtgctcta 20830
Query: 389 gtcgtgctttctcttttttttgctaactttcttcaaatctttatcctcgtaatacccagt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20831 gtcgtgctttctcttttttttgctaactttcttcaaatctttatcctcgtaatacccagt 20890
Query: 449 tgcgaaatgtctagtcttgagacccttaaccttcaacacatcctttctatccactcttac 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20891 tgcgaaatgtctagtcttgagacccttaaccttcaacacatcctttctatccactcttac 20950
Query: 509 cttagaataatcaatgcttggaatctttgcagtttcgcttatggaaaagattctatcaaa 568
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 20951 cttagaataatcaatgcttggaatctttgcagtttcgcttatggtaaagatcttatcaaa 21010
Query: 569 tgatcttgatgcaaatgaatcgaccgtcaactttggcttatttacaggagtcaataatgt 628
||||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||||
Sbjct: 21011 tgatcttgatgcagatgaatcgacggtcaactttgtcttatctacaggagtcaataatgt 21070
Query: 629 caattcag-agaagaagatgccccagagtgggaattttcttgtgggattccttcctt-ac 686
|||||||| |||||||||||| ||||| ||||||||||||| ||||| | ||||| ||
Sbjct: 21071 caattcagaagaagaagatgcaccagaagtggaattttcttgttggatttcctccttcac 21130
Query: 687 aaag-aatgtttacc-ttttgttcgatgccagtttcc-actccgttg-gaaatcaatagg 742
| || |||||||||| ||||||||||||||||||||| |||||| || ||||||||||||
Sbjct: 21131 agagaaatgtttacctttttgttcgatgccagtttccgactccgctgtgaaatcaatagg 21190
Query: 743 ta 744
||
Sbjct: 21191 ta 21192
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8611
Number of Sequences: 1807
Number of extensions: 8611
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 1006
length of database: 10,358,551
effective HSP length: 16
effective length of query: 990
effective length of database: 10,329,639
effective search space: 10226342610
effective search space used: 10226342610
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)