BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF01RM1.SCF screened BAC_end
(996 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1767 946 0.0
>3x_Contig1767
Length = 23302
Score = 946 bits (477), Expect = 0.0
Identities = 528/541 (97%), Gaps = 3/541 (0%)
Strand = Plus / Minus
Query: 46 tttccctcgctggaagattttcaatacttcgtcttttagaagcgaaaaggccgaaacgta 105
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 18483 tttccctcgctggaagattttcaagacttcgtcttttagaagcgaaaaggccgaaacgta 18424
Query: 106 gtattattggttcgtatacagtgatactggtagtgaaacttacttttatttatttagttg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18423 gtattattggttcgtatacagtgatactggtagtgaaacttacttttatttatttagttg 18364
Query: 166 cacgtgatctaaaatggttagataatatatgctttacctacttctttctgtggtatattt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18363 cacgtgatctaaaatggttagataatatatgctttacctacttctttctgtggtatattt 18304
Query: 226 tgttcaagaacaaggttagaacttcggccttgaacccacgggattcgtcgatgttagcga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18303 tgttcaagaacaaggttagaacttcggccttgaacccacgggattcgtcgatgttagcga 18244
Query: 286 ttttctctcttaagttggaagcggtttcttcttcgtacttgtggtagatgtcttggatgt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18243 ttttctctcttaagttggaagcggtttcttcttcgtacttgtggtagatgtcttggatgt 18184
Query: 346 tcaattcgttgaatacagctctacatttttgttccttttcagaatcctttctaccgtagt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18183 tcaattcgttgaatacagctctacatttttgttccttttcagaatcctttctaccgtagt 18124
Query: 406 tttcgtccaagatatctctttgttcttttgtagcattcttcaatgcaacgttgatgaccc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18123 tttcgtccaagatatctctttgttcttttgtagcattcttcaatgcaacgttgatgaccc 18064
Query: 466 aagaacatttgttgtcctggatatcggtaccaatcttaccgat-tctttcggtttaccca 524
|||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| |
Sbjct: 18063 aagaacatttgttgtcttggatatcggtaccaatcttaccgatatcttctggtttaccga 18004
Query: 525 aaaaatcc-agaaatcgttttggatttggaattattct-ccaatgggaacaatccgtcgc 582
|| ||||| ||||||||| |||||||||||| |||||| ||||||||| |||| ||||||
Sbjct: 18003 aacaatccaagaaatcgtcttggatttggaaatattctcccaatgggatcaatacgtcgc 17944
Query: 583 t 583
|
Sbjct: 17943 t 17943
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8599
Number of Sequences: 1807
Number of extensions: 8599
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 996
length of database: 10,358,551
effective HSP length: 16
effective length of query: 980
effective length of database: 10,329,639
effective search space: 10123046220
effective search space used: 10123046220
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)