BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF02FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1711 1318 0.0
>3x_Contig1711
Length = 15491
Score = 1318 bits (665), Expect = 0.0
Identities = 765/794 (96%), Gaps = 4/794 (0%)
Strand = Plus / Plus
Query: 84 tagaggaagaagaagaaagattagaatctgaaggcttctatgaatccgacgaagaagaaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3781 tagaggaagaagaagaaagattagaatctgaaggcttctatgaatccgacgaagaagaaa 3840
Query: 144 cttacgaaggatttgatgctgacgaaatctctgagatcagagaaaaggcagaatggatta 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3841 cttacgaaggatttgatgctgacgaaatctctgagatcagagaaaaggcagaatggatta 3900
Query: 204 gagatagacaaaagaagatgatcaatgcttcaagaaacagaaaggcattgaagaaccgtg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3901 gagatagacaaaagaagatgatcaatgcttcaagaaacagaaaggcattgaagaaccgtg 3960
Query: 264 gtaccatgcctcgttctaaattggcaaagacatatggtgacatggagaagcacatgtctt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3961 gtaccatgcctcgttctaaattggcaaagacatatggtgacatggagaagcacatgtctt 4020
Query: 324 ctttaggtcacgatatgactgctttgcaagataagcaaagagtcgctgctgaaaagaaca 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4021 ctttaggtcacgatatgactgctttgcaagataagcaaagagtcgctgctgaaaagaaca 4080
Query: 384 gatatgagcaaactggtgctgacgtggtatacggtgatcaagaagattctgctccagctg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4081 gatatgagcaaactggtgctgacgtggtatacggtgatcaagaagattctgctccagctg 4140
Query: 444 gtaagctaagacagacagatagattgacagacggtgttgctgatggttcaatgagatcga 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4141 gtaagctaagacagacagatagattgacagacggtgttgctgatggttcaatgagatcga 4200
Query: 504 aggctgaaagaatggccaaattagaaagaagagaaagaaacagaatggccagagccggtg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4201 aggctgaaagaatggccaaattagaaagaagagaaagaaacagaatggccagagccggtg 4260
Query: 564 aatctgacagacatgctactggctctctaccanaacatttgttctcaggtaagcgtggtg 623
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 4261 aatctgacagacatgctactgcctctctaccaaaacatttgttctcaggtaagcgtggtg 4320
Query: 624 ttggtaagactganttccgttaaactggctgttcttcccttctttccatcactggggatt 683
||||||||||||| ||||||||||||| |||||||||| | |||||||||||||| ||||
Sbjct: 4321 ttggtaagactgatttccgttaaactgtctgttcttccttcctttccatcactggtgatt 4380
Query: 684 tcgaacatatattatcgtgttgccaattccttttct-tttctattgaactatttata-ta 741
|||||||||||||||||||||||||||| ||||||| | ||||||||||||| |||| ||
Sbjct: 4381 tcgaacatatattatcgtgttgccaatttcttttctatctctattgaactatatatatta 4440
Query: 742 gncactaccttcatttatttgcctgcatggggggggttaaaattaattattactccttta 801
| |||||| |||||||||||| |||||| ||| |||||||| ||||||||||||||||||
Sbjct: 4441 gtcactactttcatttatttgtctgcattgggtgggttaaatttaattattactccttta 4500
Query: 802 tttgaaaaatagttacgctcctttgcaaaattaaaaaaattatacctttggattggcttt 861
|||| |||||||||||| | || || ||||||| || | |||||||||| |||| |||||
Sbjct: 4501 tttgtaaaatagttacg-tactctgtaaaattataagagttataccttt-gatttgcttt 4558
Query: 862 ttcttgaccaaata 875
| ||||||||||||
Sbjct: 4559 tccttgaccaaata 4572
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9900
Number of Sequences: 1807
Number of extensions: 9900
Number of successful extensions: 109
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)