BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF02RM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1146 0.0
3x_Contig38 170 3e-42
>3x_Contig1517
Length = 8289
Score = 1146 bits (578), Expect = 0.0
Identities = 744/789 (94%), Gaps = 9/789 (1%)
Strand = Plus / Minus
Query: 48 tgggtaaaatggtaccaacagcatagtccaaaattagatgaagtagatatgaatgttgag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4607 tgggtaaaatggtaccaacagcatagtccaaaattagatgaagtagatatgaatgttgag 4548
Query: 108 actgcagcagattccagagttgatctggcaccgaatctcatgcatagaaatgatgagttt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4547 actgcagcagattccagagttgatctggcaccgaatctcatgcatagaaatgatgagttt 4488
Query: 168 gatcacaatgcggacatggacattgacatggatctcgatacagatccgtacgcggatgca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4487 gatcacaatgcggacatggacattgacatggatctcgatacagatccgtacgcggatgca 4428
Query: 228 gacatggacatagagctggatgaatagtccttagacatgtttgtgaagtattattatcat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4427 gacatggacatagagctggatgaatagtccttagacatgtttgtgaagtattattatcat 4368
Query: 288 tttgatagaagtattaacacctatagagagagtatgtaaacaactgatttttacttgttg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4367 tttgatagaagtattaacacctatagagagagtatgtaaacaactgatttttacttgttg 4308
Query: 348 aactgaattaatgtgaaagaatataagagtgttaatgtcaaaattatgttgaagtattac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4307 aactgaattaatgtgaaagaatataagagtgttaatgtcaaaattatgttgaagtattac 4248
Query: 408 aatgcgatgtacagtacatcattatgataagcatgaaagccatcagtggatagaaattga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4247 aatgcgatgtacagtacatcattatgataagcatgaaagccatcagtggatagaaattga 4188
Query: 468 attttgaccacctnttgggttctttttgtattatttattatgacgataaaattttgcaac 527
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4187 attttgaccacct-tggggttctttttgtattatttattatgacgataaaattttgcaac 4129
Query: 528 aaataacttagctgtcatcgacaaagatcttgcgtttcttttgaa-tagaaaccgtactt 586
||||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||||||
Sbjct: 4128 aaataacttagctgtcatcgacaaagatcttgcgtttctcttgaattagaaccggtactt 4069
Query: 587 ttgcatcagtagtgacttgagtgccaatatcatctcccggttttgatgtacaaacttaaa 646
|||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct: 4068 ctgcatcagtagtgacttgagtgccaatatcatct-ccgtttttgatgtac-aacttaaa 4011
Query: 647 ggaatttgcgtccatttttaagtggctattttactggaccaattcttcaaaagtaatggg 706
|||| |||||| ||| | || |||||||||||| | |||||||||||||||||| ||
Sbjct: 4010 agaatctgcgtcaattct--aggtgctattttactgca-caattcttcaaaagtaat-gg 3955
Query: 707 tgggatgcagcatccaggggaatttttcattttttgtataaaaatttgattttgacaggc 766
| |||||||||||| ||| |||| | ||| | |||||| |||||||||| |||||||||
Sbjct: 3954 taggatgcagcatcaaggcgaatatgtca-tctttgtaataaaatttgatcttgacaggc 3896
Query: 767 ttttcattaattatttttggaacgaaaacccttgggcggcttgatttgactttatccctg 826
||||||| | ||||| | ||| ||||| | || || | ||||||||||||||| | |||
Sbjct: 3895 ttttcatcagttattctcggagcgaaaccactaggcggccttgatttgactttagcactg 3836
Query: 827 gctttggaa 835
|| ||||||
Sbjct: 3835 gcattggaa 3827
>3x_Contig38
Length = 925
Score = 170 bits (86), Expect = 3e-42
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 48 tgggtaaaatggtaccaacagcatagtccaaaattagatgaagtagatatgaatgttgag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 tgggtaaaatggtaccaacagcatagtccaaaattagatgaagtagatatgaatgttgag 31
Query: 108 actgcagcagattccagagttgatct 133
||||||||||||||||||||||||||
Sbjct: 30 actgcagcagattccagagttgatct 5
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,309
Number of Sequences: 1807
Number of extensions: 16309
Number of successful extensions: 386
Number of sequences better than 1.0e-20: 2
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)