BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF03FM1.SCF screened BAC_end
(1023 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1732 1108 0.0
>3x_Contig1732
Length = 24266
Score = 1108 bits (559), Expect = 0.0
Identities = 606/621 (97%), Gaps = 1/621 (0%)
Strand = Plus / Minus
Query: 87 caagggtatttgactgggttggtggtcactacaagaattactgacgcgactcctgcatcg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3728 caagggtatttgactgggttggtggtcactacaagaattactgacgcgactcctgcatcg 3669
Query: 147 ttctctgctcatgctgatcgtagaagcatggaacagttaattgcccaacatcagttgggt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3668 ttctctgctcatgctgatcgtagaagcatggaacagttaattgcccaacatcagttgggt 3609
Query: 207 gaatatgaattgggtagaatgttggatttgatgatcggtggtggtagaactagcttttac 266
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3608 gaatatgaattgggtagaatggtggatttgatgatcggtggtggtagaactagcttttac 3549
Query: 267 cccaagggtgctgcagcttcaccatatgggatcagaggttctcgtacagatggtcgtgac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3548 cccaagggtgctgcagcttcaccatatgggatcagaggttctcgtacagatggtcgtgac 3489
Query: 327 ttgatcaaagaagctgtagcagacggttggcactatgttggagatcgcgaatcctttaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3488 ttgatcaaagaagctgtagcagacggttggcactatgttggagatcgcgaatcctttaat 3429
Query: 387 accttatccgagggtgataatgtgaaacttcctttgcttgctttgttagctgactacgat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3428 accttatccgagggtgataatgtgaaacttcctttgcttgctttgttagctgactacgat 3369
Query: 447 ataccctttgagattgatagattagattcggaatatccatccttgaaagaagaagctatg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3368 ataccctttgagattgatagattagattcggaatatccatccttgaaagaagaagctatg 3309
Query: 507 actgcaatcaacgcattgtccaaagcaactagggattcagaccagggatttttcttgnnt 566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3308 actgcaatcaacgcattgtccaaagcaactagggattcagaccagggatttttcttgtta 3249
Query: 567 agtgaaggttctcgtattgacattgca-gtcatttgaacgattctgctggacaggttcgt 625
||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||
Sbjct: 3248 gttgaaggttctcgtattgaccatgcaggtcatttgaacgatcctgctgcacaggttcgt 3189
Query: 626 gaagtcactgcatatgatgagacgttcaaggctgttgttgaatacgctaaaaaatcagac 685
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3188 gaggtcactgcatatgatgagacgttcaaggctgttgttgaatacgctaaaaattcagac 3129
Query: 686 ttagaaaccgttataatttca 706
|||||||||| |||||||||
Sbjct: 3128 gtagaaaccgtcataatttca 3108
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6621
Number of Sequences: 1807
Number of extensions: 6621
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 1023
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1007
effective length of database: 10,329,639
effective search space: 10401946473
effective search space used: 10401946473
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)