BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC1ZF03RM1.SCF screened BAC_end
         (994 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1789                                                        1146   0.0  

>3x_Contig1789 
          Length = 30977

 Score = 1146 bits (578), Expect = 0.0
 Identities = 643/661 (97%), Gaps = 3/661 (0%)
 Strand = Plus / Plus

                                                                         
Query: 50    acccattgaatcgtacgattgtatattgaggttctgttt-aatggtacgtttggtcccac 108
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 16212 acccattgaatcgtacgattgtatattgaggttctgtttcaatggtacgtttggtcccac 16271

                                                                         
Query: 109   aaatccattgccctgtgacaatctcaccctactgttccccatactgctattaacattttt 168
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16272 aaatccattgccctgtgacaatctcaccctactgttccccatactgctattaacattttt 16331

                                                                         
Query: 169   cttttgagacttatttggtgtgctttgtgagaaagacctatagttacgtgaatcgtgcct 228
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16332 cttttgagacttatttggtgtgctttgtgagaaagacctatagttacgtgaatcgtgcct 16391

                                                                         
Query: 229   actattctgttgttgatgattttgtccctgtacttgccccggtgcctgctgttgtgcctg 288
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16392 actattctgttgttgatgattttgtccctgtacttgccccggtgcctgctgttgtgcctg 16451

                                                                         
Query: 289   ctgttgatgcaatggtgtaagctgttgagcagaatgttttgtatttcttggtgttggatt 348
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16452 ctgttgatgcaatggtgtaagctgttgagcagaatgttttgtatttcttggtgttggatt 16511

                                                                         
Query: 349   accatacccatgcaaattaactcttttgttgaccttaatgttccaaccttgaccgccgtt 408
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16512 accatacccatgcaaattaactcttttgttgaccttaatgttccaaccttgaccgccgtt 16571

                                                                         
Query: 409   caaatccatccaatcgtaatgaccatcttcttcgtacccattttcttgcatgatttgcgt 468
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16572 caaatccatccaatcgtaatgaccatcttcttcgtacccattttcttgcatgatttgcgt 16631

                                                                         
Query: 469   catcaaggagatcaaataatcataatctgggtcctgatcgaaccttaacgatctacagta 528
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16632 catcaaggagatcaaataatcataatctgggtcctgatcgaaccttaacgatctacagta 16691

                                                                         
Query: 529   cgatagatattcagcanactgttttggtatcttcggtgtcaataaattcgttggttttaa 588
             |||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 16692 cgatagatattcagcaaactgttttggtatctccggtgtcaataaatccgttggttttaa 16751

                                                                         
Query: 589   cctctgtttcgtgagttcaatcttttcatacttagcctttgtggttagagcttt-taacc 647
             |||||||||||||||| ||||||||||||||||||||||  || | ||||||||  ||||
Sbjct: 16752 cctctgtttcgtgagtccaatcttttcatacttagccttgttgttaagagctttcaaacc 16811

                                                                         
Query: 648   ttgccattgttaggacccacgttagaaat-taagaataccttgccaagggactccaagtc 706
             ||||||| || ||||||||||| ||||||  |||||||| | ||||||||||||||||||
Sbjct: 16812 ttgccatggtaaggacccacgtaagaaatagaagaatacgtggccaagggactccaagtc 16871

              
Query: 707   a 707
             |
Sbjct: 16872 a 16872


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7010
Number of Sequences: 1807
Number of extensions: 7010
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 994
length of database: 10,358,551
effective HSP length: 16
effective length of query: 978
effective length of database: 10,329,639
effective search space: 10102386942
effective search space used: 10102386942
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)