BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF05FM1.SCF screened BAC_end
(1023 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 1499 0.0
>3x_Contig1338
Length = 8134
Score = 1499 bits (756), Expect = 0.0
Identities = 858/887 (96%), Gaps = 4/887 (0%)
Strand = Plus / Plus
Query: 84 accccaggtttaaagaccttctctactttttctacaaatataggtaactttaagacaatg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6131 accccaggtttaaagaccttctctactttttctacaaatataggtaactttaagacaatg 6190
Query: 144 actttagactgtcgacgagtactttccatcagggtctattcctcgtgatattttacggtc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6191 actttagactgtcgacgagtactttccatcagggtctattcctcgtgatattttacggtc 6250
Query: 204 tctcgtctctgtttcgaaatttgcaagccaacttgcatgcagtctttcaatgactctttg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6251 tctcgtctctgtttcgaaatttgcaagccaacttgcatgcagtctttcaatgactctttg 6310
Query: 264 aattgactgttacaattcataggcaataacaagggtcctaagatgacttccgaagggttc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6311 aattgactgttacaattcataggcaataacaagggtcctaagatgacttccgaagggttc 6370
Query: 324 actgccaacttacactagtaatacttcttcagctatgctttagcagcaaagtccatacat 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371 actgccaacttacactagtaatacttcttcagctatgctttagcagcaaagtccatacat 6430
Query: 384 attgtgcatggaatcggtaagaaataaacgatatataaacagtgaacaaataccgtggat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6431 attgtgcatggaatcggtaagaaataaacgatatataaacagtgaacaaataccgtggat 6490
Query: 444 ttctgtcattgaatcaggatcatcttgctctcaatcatggttgtggttgaagcgtgaatt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6491 ttctgtcattgaatcaggatcatcttgctctcaatcatggttgtggttgaagcgtgaatt 6550
Query: 504 ttgttacagcattagatcttacaaaccagcaaaccaacattataaaagtttggcaatggc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6551 ttgttacagcattagatcttacaaaccagcaaaccaacattataaaagtttggcaatggc 6610
Query: 564 agattccgacaaacgcagggccgaagttgatgtgaaaagggtttcgatatcaagttttga 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6611 agattccgacaaacgcagggccgaagttgatgtgaaaagggtttcgatatcaagttttga 6670
Query: 624 tgtcgaaatccgttctcaagattccttaacttctgataatcccttcagtgatccaaaaat 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6671 tgtcgaaatccgttctcaagattccttaacttctgataatcccttcagtgatccaaaaat 6730
Query: 684 cgcagaatactatcgtgcattatacgatgacagtaagtacgagagtagaagtgcgtttga 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6731 cgcagaatactatcgtgcattatacgatgacagtaagtacgagagtagaagtgcgtttga 6790
Query: 744 tccagagttcacatgggacaaggaggaagaacaaatagtcgttctggaattgaacatcag 803
|||||||||||||||| |||||||||||||||| |||||||| | |||||||||||||
Sbjct: 6791 tccagagttcacatggacaaaggaggaagaacaaaaagtcgttcggaaattgaacatcag 6850
Query: 804 agttgcgttggttgcgtgctacttattttgtgct-ttcaattagatcggtggt-atctat 861
|||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||
Sbjct: 6851 agttgcgttggttgcgtgctacttatttgttgctcttcaattagatc-gtggtaatctat 6909
Query: 862 cacaagcctggggtcgataatctacttgaagatttgggtttgaacangaatgatttcact 921
||| || ||| |||||||||||||||||||||||||||| |||||| ||||||| || |
Sbjct: 6910 cac-aggctgtggtcgataatctacttgaagatttgggtatgaacagaaatgattacaat 6968
Query: 922 tttaggaattcaatcttttacctctctttttaactacccgaaatccc 968
|| | ||| |||||| ||| |||| |||| |||| ||||||||||
Sbjct: 6969 ttaggtaatcaaatcttctacatctcctttttactagccgaaatccc 7015
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6926
Number of Sequences: 1807
Number of extensions: 6926
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 1023
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1007
effective length of database: 10,329,639
effective search space: 10401946473
effective search space used: 10401946473
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)