BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF05RM1.SCF screened BAC_end
(1038 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1731 1628 0.0
>3x_Contig1731
Length = 24233
Score = 1628 bits (821), Expect = 0.0
Identities = 899/914 (98%), Gaps = 9/914 (0%)
Strand = Plus / Plus
Query: 46 tgaagtctttcatcaaggaaaaatacccagttggtgaaaacttcgacacccaattcaacc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20923 tgaagtctttcatcaaggaaaaatacccagttggtgaaaacttcgacacccaattcaacc 20982
Query: 106 tggctgtcaagagagggttggagactgagttcttctctcaaccaaagggacctgctggtt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20983 tggctgtcaagagagggttggagactgagttcttctctcaaccaaagggacctgctggtt 21042
Query: 166 ctatcaaattggtgaaaaaaccaaaggctgagtccaagaaggcagctccttctgctgtta 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21043 ctatcaaattggtgaaaaaaccaaaggctgagtccaagaaggcagctccttctgctgtta 21102
Query: 226 agaaatcttctactaccaagaagccagctgccaccaccaagaagagctctactagttcaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21103 agaaatcttctactaccaagaagccagctgccaccaccaagaagagctctactagttcaa 21162
Query: 286 aaaaggcttctgctggtaaggtcgtcaagaaggagtcttcaaagaagaccactgctaaga 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21163 aaaaggcttctgctggtaaggtcgtcaagaaggagtcttcaaagaagaccactgctaaga 21222
Query: 346 aagcagctaccaagaaggctcctgctaagaagactgccgttaagaagtccaagaaataaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21223 aagcagctaccaagaaggctcctgctaagaagactgccgttaagaagtccaagaaataaa 21282
Query: 406 gttaatcaaatttcgaatcactttatttttttacctcctgtgaatatcgattcacctaac 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21283 gttaatcaaatttcgaatcactttatttttttacctcctgtgaatatcgattcacctaac 21342
Query: 466 ttcttaatgcgtgtgttgtattttactaccttcctttgatacttctgtctacccttaata 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21343 ttcttaatgcgtgtgttgtattttactaccttcctttgatacttctgtctacccttaata 21402
Query: 526 attcagttcaaatcggttatttttgtgttatttaaatcaattataccctttatcaccact 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21403 attcagttcaaatcggttatttttgtgttatttaaatcaattataccctttatcaccact 21462
Query: 586 ctattattttcttccttgaaaaattgtctttctgttgaaatatattccaccccttcctgt 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21463 ctattattttcttccttgaaaaattgtctttctgttgaaatatattccaccccttcctgt 21522
Query: 646 cctttaccctacttattccttttgactacattcaccatcatttattccaacccaaacctc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21523 cctttaccctacttattccttttgactacattcaccatcatttattccaacccaaacctc 21582
Query: 706 ctatctcttactgtggtctctctgttactcctcctttcatcttttncttttaactcacgg 765
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 21583 ctatctcttactgtggtctctctgttactcctcctttcatctttt-cttttaactcacgg 21641
Query: 766 naaattttaanatgagaacacacccacttagattattgactagtgtattatt-acattag 824
||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||
Sbjct: 21642 -aaattttaaaatgagaacaca-ccacttagattattgactagtgtaatattaacattag 21699
Query: 825 cggatttctaaaccaatccgctctttttta-tgatatctcgaataaaatcattaaaaatt 883
|||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 21700 cggatttctaaatcaatccgctcttctttattgatatctcgaataaaatcattaaaaatt 21759
Query: 884 tcaaatcaacaggtagataccacctcacctntatcgnacatggtttcctattccattgct 943
||||||||||||||||||||||||| |||| ||||| |||| |||||||| |||||||||
Sbjct: 21760 tcaaatcaacaggtagataccacct-acctttatcgtacat-gtttccta-tccattgct 21816
Query: 944 gacacataaactgt 957
|||| |||||||||
Sbjct: 21817 gaca-ataaactgt 21829
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8099
Number of Sequences: 1807
Number of extensions: 8099
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 1038
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1022
effective length of database: 10,329,639
effective search space: 10556891058
effective search space used: 10556891058
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)