BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF06FM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig584 1112 0.0
>3x_Contig584
Length = 3317
Score = 1112 bits (561), Expect = 0.0
Identities = 636/652 (97%), Gaps = 7/652 (1%)
Strand = Plus / Plus
Query: 87 tccaactttctgcaggtatgaatcaaggtcatgagtcaagttgatcaaattgaaattctc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccaactttctgcaggtatgaatcaaggtcatgagtcaagttgatcaaattgaaattctc 620
Query: 147 aagctctgcaacgtcagatttcttataagcaaagatcgatgaaaacccatgttgttcaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagctctgcaacgtcagatttcttataagcaaagatcgatgaaaacccatgttgttcaat 680
Query: 207 acgtctgaaaaatttctcatgtaacaaacactcgttgttatcatcgtattggaagaattt 266
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acgtctgaaaaatttctcatggaacaaacactcgttgttatcatcgtattggaagaattt 740
Query: 267 atctcgaagcagcgggtcgtattcacccagaatcccatagtagaccccaccagaaccgga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atctcgaagcagcgggtcgtattcacccagaatcccatagtagaccccaccagaaccgga 800
Query: 327 ataatttaaagatcgacggacatacctctgctgggggctttgcggcgtccgatttaaagt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ataatttaaagatcgacggacatacctctgctgggggctttgcggcgtccgatttaaagt 860
Query: 387 gttcaaattgtaaaaaggcgcatcctcattcaaaaacaccgcgagccattcatgttccat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gttcaaattgtaaaaaggcgcatcctcattcaaaaacaccgcgagccattcatgttccat 920
Query: 447 catagtgggcaaagagtctggctcaccctgcataaaactgcattcaatgcctcgattctc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 catagtgggcaaagagtctggctcaccctgcataaaactgcattcaatgcctcgattctc 980
Query: 507 acacaattggcatggtcctctatccgattctcttgtacattttttctttgatttggcaca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 acacaattggcatggtcctctatccgattctcttgtacattttttctttgatttggcaca 1040
Query: 567 tgatctacacgaagtaggcgttctgccactagctcgagccctcttctt-cccctgccatt 625
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1041 tgatctacacgaagtaggcgttctgccactagctcgagccctcttcttccccctgccatc 1100
Query: 626 tncaaattctattatc-ttttaccaggagtc-ttcttttgccatttttcttatctt-act 682
| |||||||||| ||| | | |||||||||| |||| ||||||||| ||||||||| |||
Sbjct: 1101 tccaaattctataatcatctcaccaggagtctttctcttgccatttctcttatcttcact 1160
Query: 683 catcattcaaag-ccataagatac-tttactcat-gaattgaggctgatctc 731
|||||||||||| | ||||||||| ||||||||| |||||||||||||||||
Sbjct: 1161 catcattcaaagtcaataagatacttttactcatggaattgaggctgatctc 1212
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7203
Number of Sequences: 1807
Number of extensions: 7203
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)