BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC1ZF06RM1.SCF screened BAC_end
         (990 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1648                                                        1312   0.0  

>3x_Contig1648 
          Length = 16375

 Score = 1312 bits (662), Expect = 0.0
 Identities = 709/720 (98%), Gaps = 4/720 (0%)
 Strand = Plus / Plus

                                                                        
Query: 51   cttgtgactaagggcccagagaacacagaagaattaactaatgaagctaatgaattcaag 110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8596 cttgtgactaagggcccagagaacacagaagaattaactaatgaagctaatgaattcaag 8655

                                                                        
Query: 111  attttttggggtaaaaaagcatctcttcgtagattcaaggacggttccattgcaaactgc 170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8656 attttttggggtaaaaaagcatctcttcgtagattcaaggacggttccattgcaaactgc 8715

                                                                        
Query: 171  tgtgtctggtcaacttctgctattgaaagtgttgtttcttcgattttgtcctatgttcta 230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8716 tgtgtctggtcaacttctgctattgaaagtgttgtttcttcgattttgtcctatgttcta 8775

                                                                        
Query: 231  aggctacatttgactgaagactgcaaactcatcaataattccactagccaattccaacag 290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8776 aggctacatttgactgaagactgcaaactcatcaataattccactagccaattccaacag 8835

                                                                        
Query: 291  ttgttaccactaccgaacctacctgcatcttcaaagacatcagttctaaacctatcaagc 350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8836 ttgttaccactaccgaacctacctgcatcttcaaagacatcagttctaaacctatcaagc 8895

                                                                        
Query: 351  tactataacttgaagaagtcctttgacgatttgtataaaatcatgttcgagctaaaactc 410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8896 tactataacttgaagaagtcctttgacgatttgtataaaatcatgttcgagctaaaactc 8955

                                                                        
Query: 411  ccattatcaattaaatctcttttacctattggttctgcattcaggtacacatcattatgt 470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8956 ccattatcaattaaatctcttttacctattggttctgcattcaggtacacatcattatgt 9015

                                                                        
Query: 471  cagcctgtcccatacgcatattctaatcctgatttcttacaagacgttgttatcgaattc 530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9016 cagcctgtcccatacgcatattctaatcctgatttcttacaagacgttgttatcgaattc 9075

                                                                        
Query: 531  gaaacgtctacaaaatggcctgacgaaattacttcgtttggaaaagctaaagctgcattt 590
            |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 9076 gaaacgtctacaaaatggcctgacgaaattacttcgttggaaaaggctaaagctgcattt 9135

                                                                        
Query: 591  ttattgaagattcaag-atccatcacgcagactcatagtgagtacaagtgctactttaca 649
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9136 ttattgaagattcaagaatccatcacgcagactcatagtgagtacaagtgctactttaca 9195

                                                                        
Query: 650  cgtgatgaatcgattccatacaactt-gaaatagttactctaaacattttgactccag-a 707
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 9196 cgtgatgaatcgattccatacaacttggaaatagttactctaaacattttgactccagaa 9255

                                                                        
Query: 708  ggatacngnttcaagtttagagttct-actgagagaaaccaagttatgtatttgagagca 766
            |||||| | ||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 9256 ggatacggtttcaagtttagagttctaactgagagagacgaagttatgtatttgagagca 9315


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7273
Number of Sequences: 1807
Number of extensions: 7273
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 990
length of database: 10,358,551
effective HSP length: 16
effective length of query: 974
effective length of database: 10,329,639
effective search space: 10061068386
effective search space used: 10061068386
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)