BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF07RM1.SCF screened BAC_end
(1001 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1519 1178 0.0
>3x_Contig1519
Length = 9351
Score = 1178 bits (594), Expect = 0.0
Identities = 669/685 (97%), Gaps = 7/685 (1%)
Strand = Plus / Plus
Query: 47 tgaagcttacggcaaattctatgtatggttgtttgggttatgtgaacagtagattttatg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2835 tgaagcttacggcaaattctatgtatggttgtttgggttatgtgaacagtagattttatg 2894
Query: 107 ctaaaccgttagcaatgttagttacaaataaggggagagaaattctcatgaacacaagac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2895 ctaaaccgttagcaatgttagttacaaataaggggagagaaattctcatgaacacaagac 2954
Query: 167 aattagcggagagtctgggtctaacagttgtgtacggtgataccgattcggtcatgatca 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2955 aattagcggagagtctgggtctaacagttgtgtacggtgataccgattcggtcatgatca 3014
Query: 227 gtactggctgtgacaattacatggatgcaatcaaaattggtgaaaactttaaaaagctgg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3015 gtactggctgtgacaattacatggatgcaatcaaaattggtgaaaactttaaaaagctgg 3074
Query: 287 tgaatgaaagatacagtttgcttgaaatagacattgataacatcttcaaaaggttactgt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3075 tgaatgaaagatacagtttgcttgaaatagacattgataacatcttcaaaaggttactgt 3134
Query: 347 tgcatgctaagaaaaagtatgctgcattgaatgttacttttgacaagcaaaacaatgaga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3135 tgcatgctaagaaaaagtatgctgcattgaatgttacttttgacaagcaaaacaatgaga 3194
Query: 407 aaactactcttgaagttaagggtttagatatgaaacgtcgtgaattctgtccattgtcaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3195 aaactactcttgaagttaagggtttagatatgaaacgtcgtgaattctgtccattgtcaa 3254
Query: 467 aggaagtctcaactcgagtgttaaatattcttctttctgataaggactcggagagtgctt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3255 aggaagtctcaactcgagtgttaaatattcttctttctgataaggactcggagagtgctt 3314
Query: 527 tacaggagatatacgcatatatggaagaaatatcgtc-aaaagtagagaactacgagatt 585
|||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||
Sbjct: 3315 tacaggagatatacgcatatatggaagaaata-cgtcaaaaagtagagaacaacgagatt 3373
Query: 586 agaatggacaaatac-aaattaataccangctttcttaagatcctaagtcatattcttgg 644
||||||||||||||| |||||||||||| ||||||| | ||||||||||||||| || ||
Sbjct: 3374 agaatggacaaatacaaaattaataccaggctttctaaggatcctaagtcatatcctggg 3433
Query: 645 ggtaagaa-atgccagcagttc-agttgctttaag-atgagagaggc-ggacgggtagtt 700
|||||||| ||||||||||||| |||||||||||| ||||||||||| ||| ||||||||
Sbjct: 3434 ggtaagaatatgccagcagttcaagttgctttaagaatgagagaggcaggaagggtagtt 3493
Query: 701 aaagctggttctgtattaacttttg 725
|||||||||||||| |||||||||
Sbjct: 3494 aaagctggttctgtcataacttttg 3518
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8204
Number of Sequences: 1807
Number of extensions: 8204
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 1001
length of database: 10,358,551
effective HSP length: 16
effective length of query: 985
effective length of database: 10,329,639
effective search space: 10174694415
effective search space used: 10174694415
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)