BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF08FM1.SCF screened BAC_end
(985 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1497 1509 0.0
>3x_Contig1497
Length = 11582
Score = 1509 bits (761), Expect = 0.0
Identities = 818/837 (97%), Gaps = 1/837 (0%)
Strand = Plus / Minus
Query: 86 tggctggtcttcgtaaaagacaaggtattgatgttgaagaagagggtgccctagaaaagg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5547 tggctggtcttcgtaaaagacaaggtattgatgttgaagaagagggtgccctagaaaagg 5488
Query: 146 aaggaattgctcaagataaagaaattatgttagcaaatttgaaaatcttaggagagaact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5487 aaggaattgctcaagataaagaaattatgttagcaaatttgaaaatcttaggagagaact 5428
Query: 206 ctcagttacgcccagaaaatgtgacatttgtcagtaaagagttcgtacaagataccgctg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427 ctcagttacgcccagaaaatgtgacatttgtcagtaaagagttcgtacaagataccgctg 5368
Query: 266 gtgctaatggagaaacgcaaaagaaatgcaatgaaaatttcatgttagcactagcacttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5367 gtgctaatggagaaacgcaaaagaaatgcaatgaaaatttcatgttagcactagcacttt 5308
Query: 326 gtcacactgttcttgtggaagaaaacaaagatgatccagaaattatggatttcaaggctc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5307 gtcacactgttcttgtggaagaaaacaaagatgatccagaaattatggatttcaaggctc 5248
Query: 386 aatctccagacgaagcagctcttgttggtactgcaagagacatgggtttcagctttgttg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5247 aatctccagacgaagcagctcttgttggtactgcaagagacatgggtttcagctttgttg 5188
Query: 446 gtagaaccaaaaacggggtaattgtcgatattcagggagttcagaaggaatacagattac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5187 gtagaaccaaaaacggggtaattgtcgatattcagggagttcagaaggaatacagattac 5128
Query: 506 tcaatgtgttggaattcaactctactagaaagagaatgtcatgcattctaaaaattccat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5127 tcaatgtgttggaattcaactctactagaaagagaatgtcatgcattctaaaaattccat 5068
Query: 566 ctgaaaatccaaacgaagaaccaagagctntgctaatctgtaaaggtgcagactcgatca 625
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 5067 ctgaaaatccaaacgaagaaccaagagctttgctaatctgtaaaggtgcagactcgatca 5008
Query: 626 tctattccagactaagtaagaacaatgatgaaaagctactagaaaagacggccttgcatt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5007 tctattccagactaagtaagaacaatgatgaaaagctactagaaaagacggccttgcatt 4948
Query: 686 tggaacaatatgccacagaagggttaagaactctatgtattgcccaaagagaattgtcat 745
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4947 tggaacaatatgccacagaaggtttaagaactctatgtattgcccaaagagaattgtcat 4888
Query: 746 ggaaagaattcccaggatgggacgaannacatgagattgcagctgctgcccttgttgatc 805
||||||||| || || |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 4887 ggaaagaataccaagaatggaacgaaaaacatgagattgcagctgctgcccttgttgatc 4828
Query: 806 gtgaagatgaaatggnaaagggtcgctgatgtaatcgaacgtgaagtaactttgcttggg 865
||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| ||
Sbjct: 4827 gtgaagatgaaatggaaaa-ggtcgctgatgtaatcgaacgtgagttaactttgctaggt 4769
Query: 866 ggcactgcttttgaagatcgtttaacagatggtgtaccagattccattgccccctta 922
|| |||||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 4768 ggtactgctattgaagatcgtttacaagatggtgtaccagattccattgccacctta 4712
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6993
Number of Sequences: 1807
Number of extensions: 6993
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)