BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF08RM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1488 1356 0.0
>3x_Contig1488
Length = 9807
Score = 1356 bits (684), Expect = 0.0
Identities = 830/864 (96%), Gaps = 11/864 (1%)
Strand = Plus / Plus
Query: 43 cttgttgaaagagaggtgagaact-gttac-catcgtttcactcttcttaccgatctt-a 99
|||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||| |
Sbjct: 5193 cttgttgaaagagaggtgagaactagttacacatcgtttcac-cttctcaccgatcttca 5251
Query: 100 aaaagacaacaatttcatctatgcttgagttatcaccttttggttctggtgctcctgtca 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5252 aaaagacaacaatttcatctatgcttgagttatcaccttttggttctggtgctcctgtca 5311
Query: 160 tgggatgataatctacggatgaagcagaagagattcgagaaggctgtctttccattttaa 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5312 tgggatgataatctacggatgaagcagaagagattcgagaaggctgtctttccattttaa 5371
Query: 220 tgctttctgtatcagaaacattggccgctgctgccgctgcagcagcggctggaactgcta 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5372 tgctttctgtatcagaaacattggccgctgctgccgctgcagcagcggctggaactgcta 5431
Query: 280 aatttttagacgttggggaattcgatggatctgaagctgtttggttggctaatttcgcca 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5432 aatttttagacgttggggaattcgatggatctgaagctgtttggttggctaatttcgcca 5491
Query: 340 tatgatacgctgaaaacctcttcgaggctcttctttgcagattatttccctttttcaatt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5492 tatgatacgctgaaaacctcttcgaggctcttctttgcagattatttccctttttcaatt 5551
Query: 400 gagttaacgcatcgctttcagaacccttgggaacttctaacgtaggtatctgttttgttt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5552 gagttaacgcatcgctttcagaacccttgggaacttctaacgtaggtatctgttttgttt 5611
Query: 460 caatatgagctgaagtagatgtcggtcccgcgccagccaaagatgtcgttgcgctgacta 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5612 caatatgagctgaagtagatgtcggtcccgcgccagccaaagatgtcgttgcgctgacta 5671
Query: 520 cggatgaaacggaagatctttgaggagtatgctgatatttcaaagcatcttcattcctgc 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5672 cggatgaaacggaagatctttgaggagtatgctgatatttcaaagcatcttcattcctgc 5731
Query: 580 tcagttttatcatcgcctgtttaaccttaagtttcttcaagagtttaactataatatctc 639
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5732 tcagttttatcatcgcctgtttaaccttaagtttctccaagagtttaactataatatctc 5791
Query: 640 tgatctgcggtaggtatttattcaacgtttcctcagatgcagtctctctcaatgccacct 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5792 tgatctgcggtaggtatttattcaacgtttcctcagatgcagtctctctcaatgccacct 5851
Query: 700 tcaatattctttcgaa-gtctttttgcacatcgcccagatcccgaatatcaattctagca 758
|||||||| |||||| ||||||| |||||||||| |||||| ||||||||||||||||
Sbjct: 5852 ccaatattc-ttcgaaggtcttttggcacatcgccaagatccgaaatatcaattctagca 5910
Query: 759 tgggttaaatgtctactgacttacttgaaatc-ttccccatttg-acctacccatcggga 816
||||| ||||||||||||||| |||||||||| || |||| ||| || ||| |||| |||
Sbjct: 5911 tgggtaaaatgtctactgactaacttgaaatcattacccaattgaacatacacatc-gga 5969
Query: 817 aacattacgctcggtaacttttgcctttggacccttgcggtagaatttggaaataattgt 876
|||||||||||||||||| |||||| ||||||| ||||| ||||||| | |||| ||||
Sbjct: 5970 aacattacgctcggtaac-tttgcccttggaccattgcgtcagaattt-gtaatagttgt 6027
Query: 877 ttagatgaaaatcatagtttcgtc 900
|||| ||||| |||||||||||
Sbjct: 6028 ttagttgaaatcaatagtttcgtc 6051
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6888
Number of Sequences: 1807
Number of extensions: 6888
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)