BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF09RM1.SCF screened BAC_end
(1013 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig473 1245 0.0
3x_Contig713 117 5e-26
>3x_Contig473
Length = 2362
Score = 1245 bits (628), Expect = 0.0
Identities = 685/698 (98%), Gaps = 5/698 (0%)
Strand = Plus / Minus
Query: 48 tttgctcattcgttgaaa-aattgtgaattctaccagttttacttctgaggaaattttgg 106
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tttgctcattcgttgaaacaattgtgaattctaccagttttacttctgaggaaattttgg 639
Query: 107 atatcatagatggcataagagctcaaaatgatcattctgttatttgggtgtgtaataatt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 atatcatagatggcataagagctcaaaatgatcattctgttatttgggtgtgtaataatt 579
Query: 167 tgaatcagctgaagatggacctgctcaaacaacgaccagatctggcaagataactacatg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tgaatcagctgaagatggacctgctcaaacaacgaccagatctggcaagataactacatg 519
Query: 227 tcggttcaatacaaccgcttaatacttgcaattgtaataatgataataatactccataac 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tcggttcaatacaaccgcttaatacttgcaattgtaataatgataataatactccataac 459
Query: 287 tgcaacaattgcaacttgatactggttcatagtttattggttaacctttaataaggaata 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tgcaacaattgcaacttgatactggttcatagtttattggttaacctttaataaggaata 399
Query: 347 aacaacaaaaatagaaatgcaatcaaaagcaagaatgccgttaaaaaaatgaactttaat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aacaacaaaaatagaaatgcaatcaaaagcaagaatgccgttaaaaaaatgaactttaat 339
Query: 407 tgacctcaaaaaattctctctacctcgttaattatgtttctgttctttcattagagcgct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgacctcaaaaaattctctctacctcgttaattatgtttctgttctttcattagagcgct 279
Query: 467 acatttaacttttaacttaaaaatgatgttcattcaaggaacgcagttag-tttccggcc 525
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 278 acatttaacttttaacttaaaaatgatgttcattcaaggaacgcagttagttttccggcc 219
Query: 526 agctatgatatgaagaacgcttgactttccaacaacagttctataagattctactagtgg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 agctatgatatgaagaacgcttgactttccaacaacagttctataagattctactagtgg 159
Query: 586 tctgtctctcttcatggtagttntgtaagtgtcggaagactgtttgatgaggtagagatt 645
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 158 tctgtctctcttcatggtagttttgtaagtgtcggaagactgtttgatgaggtagagatt 99
Query: 646 tcaa-cac-ttttctttaagtatatccaaacagtgccttatngaatg-ttttccttaacc 702
|||| ||| ||||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 98 tcaaccactttttcttaaagtatatccaaacagtgccttatgaaatgcttttccttaacc 39
Query: 703 atttgattgcagcgtttatttggtgctcattatcatac 740
|||||||||||||||||| ||||||||| |||||||
Sbjct: 38 cattgattgcagcgtttattgggtgctcataatcatac 1
>3x_Contig713
Length = 3050
Score = 117 bits (59), Expect = 5e-26
Identities = 106/119 (89%), Gaps = 3/119 (2%)
Strand = Plus / Plus
Query: 744 ctatctgaacgcctgctantacttncctgn-atcattatttgncatttcaatggttactg 802
|||||||||||||||||| ||||| | || ||||||||||| |||||||||| ||||||
Sbjct: 15 ctatctgaacgcctgctaatacttccttgctatcattatttgtcatttcaatgtttactg 74
Query: 803 ttaaccactgttaatctga-ggtgcctcacttcctt-ttttttgtttactcccgttgaa 859
||||||||||||||||||| | ||| |||||||||| || |||||||||||| ||||||
Sbjct: 75 ttaaccactgttaatctgatgttgcttcacttccttcttctttgtttactcctgttgaa 133
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8946
Number of Sequences: 1807
Number of extensions: 8946
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 2
length of query: 1013
length of database: 10,358,551
effective HSP length: 16
effective length of query: 997
effective length of database: 10,329,639
effective search space: 10298650083
effective search space used: 10298650083
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)