BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF10RM1.SCF screened BAC_end
(1021 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1536 0.0
>3x_Contig1718
Length = 19496
Score = 1536 bits (775), Expect = 0.0
Identities = 869/895 (97%), Gaps = 5/895 (0%)
Strand = Plus / Plus
Query: 51 ttgactgaaagttgattcgtctgtataccatatcttccatcgtatacaaccattaatgaa 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13211 ttgactgaaagttgattcgtctgtataccatatcttccatcgtatacaaccattaatgaa 13270
Query: 111 acattctacaatcataaattgagtcagagcactcaaatatggttccgacttgtgatccaa 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13271 acattctacaatcataaattgagtcagagcactcaaatatggttccgacttgtgatccaa 13330
Query: 171 ataagtagaactgagaacttgttgtccaaattgagatccaaagtatttattaagtctctc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13331 ataagtagaactgagaacttgttgtccaaattgagatccaaagtatttattaagtctctc 13390
Query: 231 acataaccaatcatatgcaaagtctagttgaacacatgatatgaggcggataatatccct 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13391 acataaccaatcatatgcaaagtctagttgaacacatgatatgaggcggataatatccct 13450
Query: 291 gattctctttctatagcttgaacagtagttctcgtattcagctgtcgactggaagtccac 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13451 gattctctttctatagcttgaacagtagttctcgtattcagctgtcgactggaagtccac 13510
Query: 351 ttcaacgaaattcttggagacatgatcttcaatctgttcgtagtaaatcaaagcatttcc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13511 ttcaacgaaattcttggagacatgatcttcaatctgttcgtagtaaatcaaagcatttcc 13570
Query: 411 agcaaactccaacaagtcgggaataaccaatttctctaaaattggtaaaaattcatcgtt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13571 agcaaactccaacaagtcgggaataaccaatttctctaaaattggtaaaaattcatcgtt 13630
Query: 471 tctcaagcatgcacaccagagatctaaggaaagcccgctgacaatcaaactgggattata 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13631 tctcaagcatgcacaccagagatctaaggaaagcccgctgacaatcaaactgggattata 13690
Query: 531 agtagtttttaaaacaagcttcatatatgtttcgatgttttgtagatcagatantttgag 590
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 13691 agtagtttttaaaacaagcttcatatatgtttcgatgttttgtagatcagatattttgag 13750
Query: 591 cacgcatgtgtataaacaggttatcatatccacaaacttcttcataattggatatttggc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13751 cacgcatgtgtataaacaggttatcatatccacaaacttcttcataattggatatttggc 13810
Query: 651 ctcatcgataccctcaattggatcgaaaagcaattgtgaatatacagtgtccattaaacc 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13811 ctcatcgataccctcaattggatcgaaaagcaattgtgaatatacagtgtccattaaacc 13870
Query: 711 catactgtcaaatacacgattcacaatcatgttgnnatgatctgtgttactgtatggacg 770
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 13871 catactgtcaaatacacgattcacaatcatgttgtaatgatctgtgttactgtatggacg 13930
Query: 771 ggttgagagaatatggatagaatctantgcaatagattgggcttttgggtatgtcccttt 830
||| |||||||||||||||||||| ||||||||||||||| ||||||||||| |||||
Sbjct: 13931 ggtgaggagaatatggatagaatctagtgcaatagattgggc-tttgggtatgt-ccttt 13988
Query: 831 gttaggcacccctacattgcagagaattcgtcattgaat-ccattacttcgctcaaaggc 889
|||| |||||| ||| |||||||||| |||||||| || | || |||||||||||||||
Sbjct: 13989 gttaagcaccctaacaatgcagagaatacgtcattggatacaataacttcgctcaaaggc 14048
Query: 890 cagtttcagcagctctttaagagttccaacaa-cttacgatgtacctgggcattt 943
||||| ||||||||||||| ||||||||| || |||||||| ||||||||||
Sbjct: 14049 cagttcaagcagctctttaaagtttccaacaacctaacgatgta-ctgggcattt 14102
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6463
Number of Sequences: 1807
Number of extensions: 6463
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 1021
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1005
effective length of database: 10,329,639
effective search space: 10381287195
effective search space used: 10381287195
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)