BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF11FM1.SCF screened BAC_end
(1010 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1805 1374 0.0
3x_Contig1701 730 0.0
3x_Contig1802 105 2e-22
>3x_Contig1805
Length = 19369
Score = 1374 bits (693), Expect = 0.0
Identities = 759/776 (97%), Gaps = 5/776 (0%)
Strand = Plus / Minus
Query: 88 cagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttacta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8026 cagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttacta 7967
Query: 148 ctcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacacat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7966 ctcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacacat 7907
Query: 208 cagaagtgatagcgatgtttgctgatgagacttcagcattttgagaagcggttgttactt 267
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7906 cagaagtgatagcgatgtcggctgatgagacttcagcattttgagaagcggttgttactt 7847
Query: 268 caacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7846 caacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaaa 7787
Query: 328 tttcatcgatctccgactttgaagtgtgatactcattagatgcactttcagtggtagtgg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7786 tttcatcgatctccgactttgaagtgtgatactcattagatgcactttcagtggtagtgg 7727
Query: 388 tatcgataagacaagtggtggtgtagacggtagtaacaccgttacttgttgtagtgacag 447
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7726 tatcgataggacaagtggtggtgtagacggtagtaacaccgttacttgttgtagtgacag 7667
Query: 448 tagtcaaggagaaagttggctgtgttgattttacatcagatatggttgcatcagattcac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7666 tagtcaaggagaaagttggctgtgttgattttacatcagatatggttgcatcagattcac 7607
Query: 508 tctcggtgacagtggtatcgatagggcaagtagtggtataaatagtggtcatgccattac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7606 tctcggtgacagtggtatcgatagggcaagtagtggtataaatagtggtcatgccattac 7547
Query: 568 ttgttgtagtgacagtagtcaatgagaaggttggctctgttgatgttacatcagacgtag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7546 ttgttgtagtgacagtagtcaatgagaaggttggctctgttgatgttacatcagacgtag 7487
Query: 628 tagtgttactagcccaaccgctaaatgttggtttggtttctgcaggagtttcaactgagt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7486 tagtgttactagcccaaccgctaaatgttggtttggtttctgcaggagtttcaactgagt 7427
Query: 688 aaattgtcttgattgttggaa-tccatcctcaccagttgaggtaacaatttcagtggcga 746
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7426 aaattgtcttgattgttggaattccatcctcaccagttgaggtaacaatttcagtggcga 7367
Query: 747 aggtggtagtatattcgcctgtccagctggt-tacacggttgttgcagtctgaccttgtg 805
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7366 aggtggtagtatattcgcctgtccagctggtatacacggttgttgcagtctgaccttgtg 7307
Query: 806 tgg--tccaccgtgcagatag-gtttacagttgtattaccatcatatccagtttcg 858
|| || || ||| |||||| || ||||||| | |||||||| |||||||||||
Sbjct: 7306 gggtttcaacagtgtagatagtcttcacagttggaataccatcagatccagtttcg 7251
>3x_Contig1701
Length = 10926
Score = 730 bits (368), Expect = 0.0
Identities = 392/400 (98%)
Strand = Plus / Minus
Query: 88 cagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttacta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8175 cagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttacta 8116
Query: 148 ctcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacacat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8115 ctcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacacat 8056
Query: 208 cagaagtgatagcgatgtttgctgatgagacttcagcattttgagaagcggttgttactt 267
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 8055 cagaagtgatagcgatttcggctgatgagacttcagcattttgagaagcggttgttactt 7996
Query: 268 caacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaaa 327
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7995 caacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaag 7936
Query: 328 tttcatcgatctccgactttgaagtgtgatactcattagatgcactttcagtggtagtgg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7935 tttcatcgatctccgactttgaagtgtgatactcattagatgcactttcagtggtagtgg 7876
Query: 388 tatcgataagacaagtggtggtgtagacggtagtaacaccgttacttgttgtagtgacag 447
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7875 tatcgataggacaagtggtggtgtagacggtagtaacaccgttacttgttgtagtgacag 7816
Query: 448 tagtcaaggagaaagttggctgtgttgattttacatcaga 487
||||||| ||||| ||||||||||||||| ||||||||||
Sbjct: 7815 tagtcaatgagaaggttggctgtgttgatgttacatcaga 7776
Score = 426 bits (215), Expect = e-119
Identities = 271/287 (94%), Gaps = 2/287 (0%)
Strand = Plus / Minus
Query: 518 agtggtatcgatagggcaagtagtggtataaatagtggtcatgccattacttgttgtagt 577
||||||||||||||| ||||| ||||| || | || || | || ||||||||||||||
Sbjct: 7880 agtggtatcgataggacaagtggtggtgtagacggtagtaacaccgttacttgttgtagt 7821
Query: 578 gacagtagtcaatgagaaggttggctctgttgatgttacatcagacgtagtagtgttact 637
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 7820 gacagtagtcaatgagaaggttggctgtgttgatgttacatcagacgtaatagtgttact 7761
Query: 638 agcccaaccgctaaatgttggtttggtttctgcaggagtttcaactgagtaaattgtctt 697
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7760 agcccaaccgctaaatgttggtttggtttctgcaggagtttcaactgagtaaattgcctt 7701
Query: 698 gattgttggaa-tccatcctcaccagttgaggtaacaatttcagtggcgaaggtggtagt 756
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7700 gattgttggaattccatcctcaccagttgaggtaacaatttcagtggcgaaggtggtagt 7641
Query: 757 atattcgcctgtccagctggt-tacacggttgttgcagtctgacctt 802
||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7640 atattcgcctgtccagctggtatacacggttgttgcagtctgacctt 7594
>3x_Contig1802
Length = 45229
Score = 105 bits (53), Expect = 2e-22
Identities = 107/125 (85%)
Strand = Plus / Minus
Query: 371 actttcagtggtagtggtatcgataagacaagtggtggtgtagacggtagtaacaccgtt 430
|||||||||| ||| ||||| ||| |||| || || ||||||||||| |||||||| ||
Sbjct: 24384 actttcagtgagagtagtatcaataggacaggtagtagtgtagacggtggtaacaccatt 24325
Query: 431 acttgttgtagtgacagtagtcaaggagaaagttggctgtgttgattttacatcagatat 490
|||||||||||||||||||||||||||||| |||| | |||||| ||| ||||||| |
Sbjct: 24324 acttgttgtagtgacagtagtcaaggagaagattggttctgttgaagttatatcagatgt 24265
Query: 491 ggttg 495
|||||
Sbjct: 24264 ggttg 24260
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5963
Number of Sequences: 1807
Number of extensions: 5963
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 3
length of query: 1010
length of database: 10,358,551
effective HSP length: 16
effective length of query: 994
effective length of database: 10,329,639
effective search space: 10267661166
effective search space used: 10267661166
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)