BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF11RM1.SCF screened BAC_end
(1021 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1743 1794 0.0
>3x_Contig1743
Length = 20172
Score = 1794 bits (905), Expect = 0.0
Identities = 967/980 (98%), Gaps = 6/980 (0%)
Strand = Plus / Plus
Query: 46 atgacaccccgagttcgatcgatattactaaattatgcagctctctttgtttgaagccag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14315 atgacaccccgagttcgatcgatattactaaattatgcagctctctttgtttgaagccag 14374
Query: 106 tttgaaaaatcaatgaagaaattaactgtgcattttccgtctttcatccaagctttcgac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14375 tttgaaaaatcaatgaagaaattaactgtgcattttccgtctttcatccaagctttcgac 14434
Query: 166 gtgtctgcatatagatcaatcaagttctcatgagaaccaccgctggagagatataacttg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14435 gtgtctgcatatagatcaatcaagttctcatgagaaccaccgctggagagatataacttg 14494
Query: 226 gacaaaaacaatgaggctaaagaacaggtggaaaaaaacagttgttgaaattgtcctggc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14495 gacaaaaacaatgaggctaaagaacaggtggaaaaaaacagttgttgaaattgtcctggc 14554
Query: 286 ttggcagtcattatgagcttatggactttttccagtaaatgaaagatttctgaagtaact 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14555 ttggcagtcattatgagcttatggactttttccagtaaatgaaagatttctgaagtaact 14614
Query: 346 gtcttctcttcttttgcaatagttgccttaaccttacatagccttagtttcattagttta 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14615 gtcttctcttcttttgcaatagttgccttaaccttacatagccttagtttcattagttta 14674
Query: 406 gcgcatttgtctgctaaagccttatccaaagtgtgttgcaaacattttaataatggtaag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14675 gcgcatttgtctgctaaagccttatccaaagtgtgttgcaaacattttaataatggtaag 14734
Query: 466 atgatacttgaaaggttattccattcttcaactgtaataatggaagtattatttctagct 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14735 atgatacttgaaaggttattccattcttcaactgtaataatggaagtattatttctagct 14794
Query: 526 acagcgcgatcaaaactcttcacgtaaatctcaagcatatcgactactctatgtttgaag 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14795 acagcgcgatcaaaactcttcacgtaaatctcaagcatatcgactactctatgtttgaag 14854
Query: 586 gaaataacgttttcccgagactcttgaacttcaacctttcttttattgcctgtcggaaca 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14855 gaaataacgttttcccgagactcttgaacttcaacctttcttttattgcctgtcggaaca 14914
Query: 646 gagcccaaagcttccttacgacgtttaaagatttcagatagttgatcatcaagttgcatc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14915 gagcccaaagcttccttacgacgtttaaagatttcagatagttgatcatcaagttgcatc 14974
Query: 706 atcgcttcgtcatccatggactcgtcttcaccactgaaatcgtcatcttcatcactatct 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14975 atcgcttcgtcatccatggactcgtcttcaccactgaaatcgtcatcttcatcactatct 15034
Query: 766 tcatcactatcctcttcttcgttgtttcccagttgaacatcgccatgttcaccgacaatg 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15035 tcatcactatcctcttcttcgttgtttcccagttgaacatcgccatgttcaccgacaatg 15094
Query: 826 gagtcaggtaggttcaaagcttttgccaaagcacttgttgcctctttttcta-tttttcc 884
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 15095 gagtcaggtaggttcaaagcttttgccaaagcacttgttgcctctttttctattttttcc 15154
Query: 885 aaagcggcatccttgtcttcttca-aaacatcgtcctcagaat-ttcagcacttaggtca 942
|||||||||||||||||||||||| |||||||||||||||||| ||||||||| | |||
Sbjct: 15155 aaagcggcatccttgtcttcttcagaaacatcgtcctcagaatcttcagcactaggttca 15214
Query: 943 tcatcgncatcattg-cctcatcatcttcatcatcatcatcatctgttccttcgttc-ac 1000
|||||| |||||||| | |||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 15215 tcatcgtcatcattgtcttcatcatcttcatcatcatcatcatctgttcc-tcgttcaac 15273
Query: 1001 agcatcctggtggtcctctt 1020
|||||||| || ||||||||
Sbjct: 15274 agcatcctcgtcgtcctctt 15293
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,337
Number of Sequences: 1807
Number of extensions: 10337
Number of successful extensions: 395
Number of sequences better than 1.0e-20: 1
length of query: 1021
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1005
effective length of database: 10,329,639
effective search space: 10381287195
effective search space used: 10381287195
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)