BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZF12FM1.SCF screened BAC_end
(1001 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1325 1354 0.0
>3x_Contig1325
Length = 7053
Score = 1354 bits (683), Expect = 0.0
Identities = 781/807 (96%), Gaps = 7/807 (0%)
Strand = Plus / Minus
Query: 87 aaggctgaatttgctctgttaaagttgccaacaaatatttctatttccattttccatggt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3943 aaggctgaatttgctctgttaaagttgccaacaaatatttctatttccattttccatggt 3884
Query: 147 ttacttacgcaatggatattttacttgaattt-tacgttgtcaaagttaataacttctct 205
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3883 ttacttacgcaatggatattttacttgaaagactacgttgtcaaagttaataacttctct 3824
Query: 206 gaaaatggattaaaattagttangcttgattatggagagttgaaaactgtattacaacta 265
||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 3823 gaaaatggattaaaacaagtcatgcttgattatggagagttgaaaactgtattacaacta 3764
Query: 266 gatgatgttccacaatgtgttcaagaagaagaatttgaagagttcatgaaagtcttaagc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3763 gatgatgttccacaatgtgttcaagaagaagaatttgaagagttcatgaaagtcttaagc 3704
Query: 326 ctaaagtacaacggcaaatctcaagtacttccttttttgagtaaaggatatatgtcacaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3703 ctaaagtacaacggcaaatctcaagtacttccttttttgagtaaaggatatatgtcacaa 3644
Query: 386 tcccaagactatcttgaagtgagagatgcactaggcttaaaatacatttctaactctgaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3643 tcccaagactatcttgaagtgagagatgcactaggcttaaaatacatttctaactctgaa 3584
Query: 446 ttagattatgcattatacaaaattctataaataattaaggaagtattccgccatccctat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3583 ttagattatgcattatacaaaattctataaataattaaggaagtattccgccatccctat 3524
Query: 506 ccaaacagtcttcatatttaaacaattcttcctggctgtacga-cgttggcacagtgctt 564
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3523 ccaaacagtcttcatatttaaacaattcttcctggctgtacgagcgttggcacagtgctt 3464
Query: 565 tcggtcataccttccagtgtggacgttttcagattttccaacatttccccaaaagtacaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3463 tcggtcataccttccagtgtggacgttttcagattttccaacatttccccaaaagtacaa 3404
Query: 625 atcatgcccgttggacctacgtcgaatacgctatctaccgttggctttacaattcagtca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3403 atcatgcccgttggacctacgtcgaatacgctatctaccgttggctttacaatccagtca 3344
Query: 685 aaatcttcgtccttcgagatangatccagtttccatgatcgtgaagatttatcgtcattc 744
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3343 aaatcttcgtccttcgagataggatccagtttccatgatcgtgaagatttatcgtcattc 3284
Query: 745 aag-agtgagtttcagtttaatgatcanccaccggccaaccgtacgcattaaaagaacct 803
||| |||||||||||||| |||||||| |||||||||||||||||||||| | |||||||
Sbjct: 3283 aagaagtgagtttcagttaaatgatcaaccaccggccaaccgtacgcatt-agagaacct 3225
Query: 804 tcttttggtgatgatattgttgttagcatcaggcttaaaa--taatatgac-ttccttca 860
|||| |||||||||||||||||| |||||||||||| ||| || ||||| ||||| ||
Sbjct: 3224 tcttctggtgatgatattgttgtgagcatcaggcttcaaatttataatgactttcctcca 3165
Query: 861 tttgacgcctttatgccaatttcttgc 887
||||||| |||||||||||||||||||
Sbjct: 3164 tttgacgtctttatgccaatttcttgc 3138
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7882
Number of Sequences: 1807
Number of extensions: 7882
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 1001
length of database: 10,358,551
effective HSP length: 16
effective length of query: 985
effective length of database: 10,329,639
effective search space: 10174694415
effective search space used: 10174694415
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)